PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03125_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 332aa    MW: 37019.7 Da    PI: 7.1138
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03125_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.51e-07126145626
                                 -SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                                 C++f + G C+ Gd+C FaHg
  Cotton_A_03125_BGI-A2_v1.0 126 CSDFKK-GNCRKGDSCEFAHG 145
                                 ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-5120146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404121147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5126147IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5126145IPR000571Zinc finger, CCCH-type
SMARTSM0035616155178IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812155179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MLEETRQLNP TVLIPPWPYL SDDLTAENNF SDNGNPFYLQ EALAALQCYL PSDEPGFESD  60
SEISGLYNPD SPVDAYSCDH FRMFEFKVRR CGRGRSHDWT ECPYAHPGEK ARRRDPRKFH  120
YSGMACSDFK KGNCRKGDSC EFAHGVFECW LHPARYRTLP CKDGSGCRRR VCFFAHTPDQ  180
LRVINFADSF DSSPPCTKAM SFSGSPPAEC SPSVSPIAQP PTINTMVASL RNLRLGKVKS  240
LPSSGFGSPK GSMIRPSLSS LPSTPTRNLT RPGIGYLDFE CGEEFVMERV ESGKHLRSKI  300
FEKLSQANSL ERVYSGLVSG GPDVDWVSDL VN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618410.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-119C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2P5XTD50.0A0A2P5XTD5_GOSBA; Uncharacterized protein
STRINGGorai.013G229000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-115C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]