PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02971_BGI-A2_v1.0
Common NameF383_20661
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 563aa    MW: 61681.5 Da    PI: 7.1971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02971_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.7e-15367413455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  hn  ErrRRdriN+++  L+el+P +      K +Ka++L  A++Y+ksLq
  Cotton_A_02971_BGI-A2_v1.0 367 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDDAIDYLKSLQ 413
                                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-20361429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.987363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.36E-16366417No hitNo description
Gene3DG3DSA:4.10.280.104.5E-21367421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-13367413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-17369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MNHCVPDFEM EDDYAILSPP SLTRVEKPPP RPEDEIMELL WQNGQVVMQS QNQRSMKKLP  60
SFKLLDADHS APREIRSSSP SHKHRRHHHQ EQQQLVTDHL FMQEDEMASW LHYPISDTNF  120
DHDFCTDLLY PPSSSPTAAV APCVSSTVAT STPPILKRVS QVSVSASANE SVPRPPVPPA  180
RRNELEPARI HNFSHFSRHI TARAEQSELS NSKSVMGEST VVDSSNTPAA APELRAAQAM  240
PSNTEAASGG NNNNNNNNNN ANANMSAAGV PYLQSADVRL GANKGSLATC EVTVTSSPGG  300
SSASAEPTAQ KAASAEDRKR KGRELDEAEC HSELLLMLPK NAEFESADTK KQTRGSTSAK  360
RSRAAEVHNL SERRRRDRIN EKMRALQELI PRCNKSDKAS MLDDAIDYLK SLQMQVQMMS  420
MGCGMVPMFP GVQQYISPMG IGMSMGMDMG IIRPMMSFPN VVAGSALPTL AAAAHLGPRI  480
PMPAFHMPPS IPAPDPSRFQ PSNQSDPIPN PLFMQNLNQA QQYIGLHQTM QIPHPQGQAM  540
AQPSSRRGAE KVENHPTGRS ISF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371376ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6161970.0JX616197.1 Gossypium hirsutum clone NBRI_GE60666 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649922.10.0PREDICTED: transcription factor PIF1 isoform X1
TrEMBLA0A1U8L7K00.0A0A1U8L7K0_GOSHI; transcription factor PIF1-like isoform X1
STRINGGorai.007G151900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-58phytochrome interacting factor 3-like 5