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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_02832_BGI-A2_v1.0 |
Common Name | F383_28796 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
C2H2 |
Protein Properties |
Length: 262aa MW: 29471.4 Da PI: 7.6826 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_02832_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 18.1 | 7.2e-06 | 105 | 124 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++C+ C k+F+r nL+ H+
Cotton_A_02832_BGI-A2_v1.0 105 FSCHVCFKTFNRYNNLQMHM 124
89*****************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MEPSDVSCDS DIVSSTNYHT DMEPLDLFPG AIHESLDPMP LLSYENPKPC SEEDKEDVTV 60 ALHIGLPDPS NDSNTNSSKE NIANGGGKQY WIPTPEQILI GFTNFSCHVC FKTFNRYNNL 120 QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCAEGCKN NIEHPRAKPL KDFRTLQTHY 180 KRKHGLKPFM CRKCGKFLAV KGDWRTHEKN CGKRWLCVCG SDFKHKRSLK DHIKAFGSGH 240 GPFPPSFDGV EVLEDTASSL HV
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Functional Description ? help
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Source |
Description |
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX580084 | 1e-114 | JX580084.1 Gossypium hirsutum clone NBRI_GE12446 microsatellite sequence. |