PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02832_BGI-A2_v1.0
Common NameF383_28796
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 262aa    MW: 29471.4 Da    PI: 7.6826
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02832_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.2e-06105124120
                                 EEETTTTEEESSHHHHHHHH CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                 ++C+ C k+F+r  nL+ H+
  Cotton_A_02832_BGI-A2_v1.0 105 FSCHVCFKTFNRYNNLQMHM 124
                                 89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.1E-597127No hitNo description
PROSITE profilePS5015710.055105132IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-4105124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576672.79E-5171209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEPSDVSCDS DIVSSTNYHT DMEPLDLFPG AIHESLDPMP LLSYENPKPC SEEDKEDVTV  60
ALHIGLPDPS NDSNTNSSKE NIANGGGKQY WIPTPEQILI GFTNFSCHVC FKTFNRYNNL  120
QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCAEGCKN NIEHPRAKPL KDFRTLQTHY  180
KRKHGLKPFM CRKCGKFLAV KGDWRTHEKN CGKRWLCVCG SDFKHKRSLK DHIKAFGSGH  240
GPFPPSFDGV EVLEDTASSL HV
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5800841e-114JX580084.1 Gossypium hirsutum clone NBRI_GE12446 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016754308.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
RefseqXP_017645159.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG31e-112TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A0B0MYQ30.0A0A0B0MYQ3_GOSAR; Protein TRANSPARENT TESTA 1-like protein
TrEMBLA0A1U8PVB20.0A0A1U8PVB2_GOSHI; protein TRANSPARENT TESTA 1-like
STRINGGorai.010G039600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]