PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_02794_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 384aa MW: 41859.8 Da PI: 4.5116

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02794_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.9	9.7e-05	332	372	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r R ++i + + Lr+l+P+ +K + +++L +A++Y+ksL Cotton_A_02794_BGI-A2_v1.0 332 KRLRIEKIHETVSVLRSLIPSG----EGK-DAIMVLDEAIDYLKSL 372 6899***************6....244.569*********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.058	323	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-6	327	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.43E-4	333	373	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-5	333	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MVCQAASQTR FRALKYENGI AGSATIVVRV IACFQPLQDC QMGEGCGFSF PQQRFDWLSH 60 DLSYLAAPHP LVQQNTNPQL VNSGIDMVSV PRTLPDYANP GIIPQLQVGQ VNEPCGWFYC 120 SPHYWQGLVP ASTNPYEYYN EKIVSKAGLG CAQKRFLVFD QSGDQTTMIF SSSLGTPIKC 180 ATWGPKSPAA CNFNGEDPIT KVNPDLHSGL ISSNVFDENG TNTQSEMHED TEELNALLYS 240 DDDSYYTDDE VTSAVHSPCT MTAHPEQLEG GGTESVASSI GPTKKRKLLD DGNDYLPLLT 300 DAASSVNPSR CSEYVDDADS SCANMESSSS NKRLRIEKIH ETVSVLRSLI PSGEGKDAIM 360 VLDEAIDYLK SLKLKAKTLG LNAL

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MVCQAASQTR FRALKYENGI AGSATIVVRV IACFQPLQDC QMGEGCGFSF PQQRFDWLSH  60
DLSYLAAPHP LVQQNTNPQL VNSGIDMVSV PRTLPDYANP GIIPQLQVGQ VNEPCGWFYC  120
SPHYWQGLVP ASTNPYEYYN EKIVSKAGLG CAQKRFLVFD QSGDQTTMIF SSSLGTPIKC  180
ATWGPKSPAA CNFNGEDPIT KVNPDLHSGL ISSNVFDENG TNTQSEMHED TEELNALLYS  240
DDDSYYTDDE VTSAVHSPCT MTAHPEQLEG GGTESVASSI GPTKKRKLLD DGNDYLPLLT  300
DAASSVNPSR CSEYVDDADS SCANMESSSS NKRLRIEKIH ETVSVLRSLI PSGEGKDAIM  360
VLDEAIDYLK SLKLKAKTLG LNAL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	2e-32	HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBank	HG975524	2e-32	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017645828.1	0.0	PREDICTED: transcription factor bHLH145
TrEMBL	A0A2P5YCU5	0.0	A0A2P5YCU5_GOSBA; Uncharacterized protein
STRING	Gorai.010G035900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10530	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-08	LJRHL1-like 1