PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 256aa MW: 29647.2 Da PI: 4.7089

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02718_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173	8.9e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yLk+k++++++el ++i+evd+yk+ePw+L k + ++ ewyfF +rd+ky++g r+nrat++g Cotton_A_02718_BGI-A2_v1.0 6 LPPGFRFHPTDEELVNYYLKRKINRQEIEL-DIIPEVDLYKCEPWELAeKsFFPRRDPEWYFFGPRDRKYPNGFRTNRATRAG 87 79**************************.99**********84334455778********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWk+tgkd++v + +++++g+kktLv+y grap+g +tdWvmheyrl Cotton_A_02718_BGI-A2_v1.0 88 YWKSTGKDRRVSC-QNRAIGMKKTLVYYLGRAPQGIRTDWVMHEYRL 133 *********.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-61	3	165	IPR003441	NAC domain
PROSITE profile	PS51005	58.324	6	165	IPR003441	NAC domain
Pfam	PF02365	6.6E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MAPLGLPPGF RFHPTDEELV NYYLKRKINR QEIELDIIPE VDLYKCEPWE LAEKSFFPRR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVSC QNRAIGMKKT LVYYLGRAPQ 120 GIRTDWVMHE YRLDDNECEG TCGIQEVKRS GYWQDSYALC RVFKKNGITG SETEEQGQSS 180 LTVMDQYCSQ GVIMNDSETM YGEIPIGASS SSCMEEEEDK DDSWMQFITD DPWCSSNCTA 240 AMAGDELSNT GFYNLK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-54	2	166	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847199	7e-53	KC847199.1 Gossypium hirsutum NAC domain protein NAC22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017645250.1	0.0	PREDICTED: NAC domain-containing protein 86-like isoform X1
Swissprot	Q9FFI5	2e-84	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A1U8LEK3	1e-172	A0A1U8LEK3_GOSHI; NAC domain-containing protein 86-like
STRING	Gorai.001G070700.1	1e-173	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8504	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-119	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]