 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cotton_A_02692_BGI-A2_v1.0 |
| Common Name | F383_24602 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 287aa MW: 32700 Da PI: 4.7005 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_02692_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62 | 9e-20 | 96 | 149 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t +q++ Le+ Fe ++++ e++++LAk+lgL+ rqV +WFqNrRa++k
Cotton_A_02692_BGI-A2_v1.0 96 KKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWK 149
56689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 126.9 | 8.7e-41 | 95 | 186 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83
ekkrrl+ +qv++LE+sFe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++ +L ke
Cotton_A_02692_BGI-A2_v1.0 95 EKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQASFNTLKADYGNLLKE 177
69********************************************************************************* PP
HD-ZIP_I/II 84 veeLreelk 92
+++L++e+
Cotton_A_02692_BGI-A2_v1.0 178 KDKLKQEVL 186
*****9985 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MAGGRVVSCN NTNSVGGSSN LSVLLQNQRV PSSSEPMDPL FIPRPGSSPY SFFVSGTRSM 60
VSFEDVHGGN RSFFRSFDEE ENGDEDLDEY FHQPEKKRRL TVDQVQFLEK SFEVENKLEP 120
ERKTQLAKEL GLQPRQVAIW FQNRRARWKT KQLEKDYDTL QASFNTLKAD YGNLLKEKDK 180
LKQEVLQLTD KLVMKEKNNS ELSDVNTVCQ EPPQKPVDSD SPHSSYPFET DQSDTSQDEE 240
DSLSKALFQP SSHIFPKLEG NDYSDPPASS CSYGFHVEDH AFWSSAY
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 143 | 151 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
