PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02660_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 427aa    MW: 47191.7 Da    PI: 9.8406
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02660_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.97.1e-1579166186
                    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstc 79 
                                 +W+++ + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ ++++pk   qCk++++ ++k+yk +k+    +  +  s++
  Cotton_A_02660_BGI-A2_v1.0  79 CWSEDATGVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKAKIAAG--GGPSKW 159
                                 7*************************************856666666644449*****************99997..67778* PP

                    trihelix  80 pyfdqle 86 
                                 ++f++l+
  Cotton_A_02660_BGI-A2_v1.0 160 VFFEKLD 166
                                 *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2577168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEEDEEIQSQ PSNAAAGSPS PSSLSPSSNG RITVTVAAAP PSEPPPPEEP QLHEKTIVLA  60
LPPPQQTKNS GGGGGREDCW SEDATGVLID AWGERYLELS RGNLKQKHWK EVADIVSSRE  120
DYRKTPKTDI QCKNRIDTVK KKYKLEKAKI AAGGGPSKWV FFEKLDQLIG PTAKTAVNVA  180
TAADGGSGGS TGLLSKVPMG IPVGIRSSLN PLRVSQLHER QQQQQKQPRM VALKDQNKMQ  240
IRKRAPMDTD SEEEEADSMD SLPPPTTGKR ARRVVDKVVS SGGKGRKWGN SVRDLTQAIL  300
RFGEAYEQAE TAKLQQVVEM EKQRMKLAKE LELQRMQFFM KTQLEISQLK HGRRSGGIGN  360
SNCEKMLSCL YPKKSLLNFT VNVVRYCQIK SVNGYISCGV NQLKGSTSYP KLQQIPTLSF  420
HQTYCYH
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153210.0JX615321.1 Gossypium hirsutum clone NBRI_GE59245 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606890.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-113ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2P5WA660.0A0A2P5WA66_GOSBA; Uncharacterized protein
STRINGGorai.009G144800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-52sequence-specific DNA binding transcription factors