PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_02596_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 483aa MW: 54671.9 Da PI: 9.5925

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02596_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.5e-17	16	71	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ ql +Lee++++++ ps e++++LA +++Lte+q++ WF+ rR k+k+ Cotton_A_02596_BGI-A2_v1.0 16 KKRTFKTPAQLLALEEVYKEQKFPSDEMKARLAVQIRLTEKQISSWFCHRRLKDKR 71 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-17	5	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.51E-16	10	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.001	12	72	IPR001356	Homeobox domain
SMART	SM00389	2.8E-17	14	76	IPR001356	Homeobox domain
Pfam	PF00046	3.2E-15	16	71	IPR001356	Homeobox domain
CDD	cd00086	1.33E-15	16	72	No hit	No description
PROSITE pattern	PS00027	0	47	70	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
EQQTEENKGS VDVANKKRTF KTPAQLLALE EVYKEQKFPS DEMKARLAVQ IRLTEKQISS 60 WFCHRRLKDK RRDESYPNGR QDHSSGVIQD RGSGLRQDSC GSIKQGDYRN IDLREVESRR 120 IYGQEFPAAD LKFECRSHQN PYDDRMEDTS SESNLSLNDQ PENGAITQIN PRSSKSIGYK 180 PSGYLKVKGE IENPAITAVK RQLGRHFKED GPLLGIQFDS LPPGAFEFPS SSPVNEPMYV 240 GDTRQTHSPD ISGVIKQPSN IVNVHNSKIS SQDSDMEGAK FNTVQGSERL DRKSHHQLKH 300 RSSLDIYNDS TKKSTLTDSK RIKTSSKFAV EKMGSDSFPN HPSPYGMKIS DEQQKPWLHD 360 DDSHTYKAPK NENLSRTSNL IRGYNESSST ERGSSARMGK VEKLRGEWKT KKECPVTVKN 420 DLKNKLRVSK QVNVQYPQQD FAAYAPHARL PLLTNQTKGY VLDSVTTANY ALTHFTVPSS 480 LEK

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

EQQTEENKGS VDVANKKRTF KTPAQLLALE EVYKEQKFPS DEMKARLAVQ IRLTEKQISS  60
WFCHRRLKDK RRDESYPNGR QDHSSGVIQD RGSGLRQDSC GSIKQGDYRN IDLREVESRR  120
IYGQEFPAAD LKFECRSHQN PYDDRMEDTS SESNLSLNDQ PENGAITQIN PRSSKSIGYK  180
PSGYLKVKGE IENPAITAVK RQLGRHFKED GPLLGIQFDS LPPGAFEFPS SSPVNEPMYV  240
GDTRQTHSPD ISGVIKQPSN IVNVHNSKIS SQDSDMEGAK FNTVQGSERL DRKSHHQLKH  300
RSSLDIYNDS TKKSTLTDSK RIKTSSKFAV EKMGSDSFPN HPSPYGMKIS DEQQKPWLHD  360
DDSHTYKAPK NENLSRTSNL IRGYNESSST ERGSSARMGK VEKLRGEWKT KKECPVTVKN  420
DLKNKLRVSK QVNVQYPQQD FAAYAPHARL PLLTNQTKGY VLDSVTTANY ALTHFTVPSS  480
LEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	72	RRLKDKRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017607560.1	0.0	PREDICTED: uncharacterized protein LOC108453778
Refseq	XP_017607561.1	0.0	PREDICTED: uncharacterized protein LOC108453778
TrEMBL	A0A2P5YFT1	0.0	A0A2P5YFT1_GOSBA; Uncharacterized protein
STRING	Gorai.013G254100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	8e-73	HB-other family protein