PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02581_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 454aa    MW: 50724.4 Da    PI: 6.328
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02581_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4549.5e-139264491374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++lLl+cA++v++g+le+a+ +L+++selaspdgd+mqR+aayf eALa r+++++++l ka+++++   + +se++ +++l
  Cotton_A_02581_BGI-A2_v1.0  26 LIHLLLTCANHVATGSLENANIALEQISELASPDGDTMQRIAAYFSEALADRILKTWPGLHKAINSTRVV-DLVSEQALVRRL 107
                                 689*************************************************************999886.679999****** PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                                 f+ev+P+lk ++l+ NqaI ea+ege+ vH+iD+++ +++QW+aL++ L++Rpegpp+lRiTg++     +ke l ++g+rL+
  Cotton_A_02581_BGI-A2_v1.0 108 FFEVFPFLKAAFLLVNQAIIEAMEGEKVVHVIDLNAAEPMQWIALIRGLSARPEGPPHLRITGIHV----RKEVLDQMGHRLS 186
                                 ******************************************************************....9************ PP

                        GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................................... 214
                                 + Ae+l++pf+fn+ v+ +ledl++e+L+vk+gEa+a+++vl+lh+ll                                   
  Cotton_A_02581_BGI-A2_v1.0 187 EEAEKLDIPFQFNP-VVGDLEDLDVERLHVKTGEAVAISSVLRLHSLLayddeplrkklplalknsngihlqralqmsqntlg 268
                                 **************.7999**************************************************************** PP

                        GRAS 215 .......................desvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                                                        +      s    + d++L ++++l Pk+vv++eq+++hn+++++er+le+l+ y+alfd+
  Cotton_A_02581_BGI-A2_v1.0 269 ellekdkvngcspspdsasssplS------SpvspKVDTFLTALRGLLPKLVVITEQDSNHNGSTLMERLLESLHSYAALFDC 345
                                 *****************7654322......3334468********************************************** PP

                        GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                                 le++++r+s er k+E++l+g+ei+n+++cegaer+erhe+lekW +rl++aGF +vpls++ + qak+ll+ ++ dgy++++
  Cotton_A_02581_BGI-A2_v1.0 346 LESTVSRASPERLKLEKMLFGNEIKNIISCEGAERKERHEKLEKWIQRLDSAGFCNVPLSYYGMLQAKTLLQGYNCDGYKMKD 428
                                 *********************************************************************************** PP

                        GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                                 e+g+++ +W+drp++svSaWr
  Cotton_A_02581_BGI-A2_v1.0 429 ENGCVMVCWQDRPMFSVSAWR 449
                                 ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.2731429IPR005202Transcription factor GRAS
PfamPF035143.3E-13626449IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MSLSPSLGSS YPWLKELKSE ERGLYLIHLL LTCANHVATG SLENANIALE QISELASPDG  60
DTMQRIAAYF SEALADRILK TWPGLHKAIN STRVVDLVSE QALVRRLFFE VFPFLKAAFL  120
LVNQAIIEAM EGEKVVHVID LNAAEPMQWI ALIRGLSARP EGPPHLRITG IHVRKEVLDQ  180
MGHRLSEEAE KLDIPFQFNP VVGDLEDLDV ERLHVKTGEA VAISSVLRLH SLLAYDDEPL  240
RKKLPLALKN SNGIHLQRAL QMSQNTLGEL LEKDKVNGCS PSPDSASSSP LSSPVSPKVD  300
TFLTALRGLL PKLVVITEQD SNHNGSTLME RLLESLHSYA ALFDCLESTV SRASPERLKL  360
EKMLFGNEIK NIISCEGAER KERHEKLEKW IQRLDSAGFC NVPLSYYGML QAKTLLQGYN  420
CDGYKMKDEN GCVMVCWQDR PMFSVSAWRC RNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-42144527382Protein SCARECROW
5b3h_A2e-42144526381Protein SCARECROW
5b3h_D2e-42144526381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6151531e-116JX615153.1 Gossypium hirsutum clone NBRI_GE58996 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605379.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1U8MN500.0A0A1U8MN50_GOSHI; scarecrow-like protein 3
STRINGGorai.013G252600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]