PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02439_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 167aa    MW: 18767.7 Da    PI: 8.8564
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02439_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0587109123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C++Cg+ Fs+   L  H+r+H
  Cotton_A_02439_BGI-A2_v1.0  87 HECSICGQEFSTGQALGGHMRRH 109
                                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.07E-838109No hitNo description
PfamPF139125.3E-113863IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5363966IPR007087Zinc finger, C2H2
SMARTSM003551.13961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-485109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.3E-1286111IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.28487114IPR007087Zinc finger, C2H2
SMARTSM003550.007687109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKRERESVEI QGFDIAKCLM LLSQGLETTP KEHSVSEVFE CKTCHRCFPS FQALGGHRAS  60
HKRPKLMGDK SNEKPQFLCL STKPRTHECS ICGQEFSTGQ ALGGHMRRHR ATMNESFSPF  120
PLVPTVPVLK RSNSSRRVVC LDLNLTPLEN DLQVLFGNKA PKVDLCI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610446.11e-121PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD44e-52ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1U8HWB31e-119A0A1U8HWB3_GOSHI; zinc finger protein ZAT11-like
STRINGGorai.006G176100.11e-115(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-54C2H2 family protein