PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02437_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 167aa    MW: 18841.9 Da    PI: 9.2615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02437_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002187109123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C+ Cg+ Fs    L  H+r+H
  Cotton_A_02437_BGI-A2_v1.0  87 HECSFCGQEFSMGQALGGHMRRH 109
                                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-838109No hitNo description
PfamPF139124.1E-93863IPR007087Zinc finger, C2H2
SMARTSM003553.23961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6193966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-482109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-986110IPR007087Zinc finger, C2H2
SMARTSM003550.07687109IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9187109IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKRERESVEI QGFDIAKCLM LLSQGLQTKS KEHSVNEVFE CKTCHRCFPS FQTLGGHRAS  60
HKRPKLMGDK PNETIQFPSL STKPKTHECS FCGQEFSMGQ ALGGHMRRHR VAMNESFSPF  120
PLVPTVPVLK RSNSSRRVVC LDLNLTPLEN DLQVLFGNKA PKVDLCI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610481.11e-121PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD42e-50ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1U8HW991e-117A0A1U8HW99_GOSHI; zinc finger protein ZAT11-like
STRINGGorai.006G176000.11e-115(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.17e-53C2H2 family protein