PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02413_BGI-A2_v1.0
Common NameF383_23187
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 299aa    MW: 33022.1 Da    PI: 9.4607
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02413_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.6e-133983147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  Cotton_A_02413_BGI-A2_v1.0 39 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 83
                                789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-163389IPR009057Homeodomain-like
PROSITE profilePS5129414.7463488IPR017930Myb domain
TIGRFAMsTIGR015571.0E-183786IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.4E-63879IPR009057Homeodomain-like
SMARTSM007172.7E-103886IPR001005SANT/Myb domain
PfamPF002491.1E-103983IPR001005SANT/Myb domain
CDDcd001676.60E-84184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MALPGLGPFS TAETAASTVS SSEDPNKKIR KPYTISKSRE SWTEPEHDKF LEALQLFDRD  60
WKKIEAYVGS KTVIQIRSHA QKYFLKVQKS GTSEHLPPPR PKRKAAHPYP QKASKNVLGQ  120
PQVSEPLQSP AALLDTGYVL RSNPSLMLAD PVTRAAASPQ TNNAQTISFA QDKKGPGMAN  180
NSCSSTESTR KTTEVGDTTD RGNHGHGLRV LPDFAQVYSF IGSVFDPNTK GHMQKLKKMD  240
PIDVETVLLL MRNLSINLTS PDFEDHRRLL SSYEIDTETN NINSGACEAV DNNQSKRIT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608742.10.0PREDICTED: protein REVEILLE 6-like isoform X2
SwissprotQ8H0W31e-126RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0B0MF460.0A0A0B0MF46_GOSAR; Transcription factor ASG4-like protein
STRINGGorai.007G013200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-111MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]