PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_02202_BGI-A2_v1.0 | ||||||||
Common Name | F383_11435 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 483aa MW: 53446.3 Da PI: 8.2165 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6.1e-17 | 154 | 203 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cotton_A_02202_BGI-A2_v1.0 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 203 78*******************......55************************997 PP | |||||||
2 | AP2 | 38.8 | 2.3e-12 | 246 | 293 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 s+y+GV+ +k grW+A+ + +++++lg f+++ eAa+a+++a+ k Cotton_A_02202_BGI-A2_v1.0 246 SKYRGVTLHK-CGRWEARMGQF--L-GKRYIYLGLFDSEVEAARAYDKAAIK 293 89********.7******5553..2.26**********99*********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-15 | 154 | 211 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.5E-9 | 154 | 203 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-17 | 155 | 211 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.899 | 155 | 211 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.87E-11 | 155 | 210 | No hit | No description |
SMART | SM00380 | 3.4E-31 | 155 | 217 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-8 | 246 | 293 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.72E-24 | 246 | 306 | No hit | No description |
SuperFamily | SSF54171 | 3.6E-16 | 246 | 306 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-15 | 247 | 305 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-30 | 247 | 310 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.475 | 247 | 304 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-6 | 248 | 259 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-6 | 286 | 306 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MLDLNLNVAS PESTQGLDSA APFTDELNNE GSRNQMDESG TSNSSIVNED DESCSTRASG 60 QAFTLSFDIL KVGRKSRNHE AALVVTRELF PVKGIGADFG SSEAQSSGNS SNKSKWIDLS 120 FERKEAAAEP RVMQQQQPLQ TVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY 180 LGGFDTAHAA ARAYDRAAIK FRGVDADINF SLCDYEDDMK QTKDLSKEEF VHVLRRQSTG 240 FSRGSSKYRG VTLHKCGRWE ARMGQFLGKR YIYLGLFDSE VEAARAYDKA AIKSNGREAV 300 TNFELSTYEG EMVFDTRNKG NGHNLDLNLG ISPPVSDGPK EKENAGHLQM NNGKSLRAEN 360 PAAATFSVPS FQGLAGTSDQ PIFWNSAYPR FFPSEERTMV KPVEFDPPQR VPDWPWQMHG 420 QVSTTLMPLF SHAASSGFSF SATPPPTTTA ILPSKPQNTT AVHSLCFAAS TTNAINTPQH 480 RQS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017616590.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
Refseq | XP_017616591.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
Swissprot | Q9SK03 | 1e-123 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A2P5WSQ8 | 0.0 | A0A2P5WSQ8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G139800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5861 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-135 | related to AP2.7 |