 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cotton_A_02191_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
NAC |
| Protein Properties |
Length: 331aa MW: 37730.4 Da PI: 5.0212 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_02191_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 179.9 | 6.4e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81
lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat+ g
Cotton_A_02191_BGI-A2_v1.0 6 LPPGFRFHPTDEELVAYYLDRKISGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDKKYPNGSRTNRATRGG 87
79****************************.99**************96435566888************************* PP
NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
yWkatgkd++v + ++++vg+kktLv+y+grap+g +t+Wvmheyrl
Cotton_A_02191_BGI-A2_v1.0 88 YWKATGKDRAVQT-SKAVVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
************9.999****************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MAPMTLPPGF RFHPTDEELV AYYLDRKISG RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60
DMEWYFYSPR DKKYPNGSRT NRATRGGYWK ATGKDRAVQT SKAVVGMKKT LVYYRGRAPH 120
GIRTNWVMHE YRLLHSASPT APSSLKDSYS LCRIFKKNIQ IPKTKGAAVE NNQSFGDEIS 180
RGREAEVEDE NFNTSSSDVT QGTPNETGMA DEYQPPFTSD EANSSANLSS LGPDFSSDLF 240
QIIHLIHMCI MNEMQIPSYT NLHYQAPYPP LELEDFPQIN IISETKASKA EIIDEYMMYD 300
KCKDYMNGSL EEIFSLCASQ DNSMPPLSMH D
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-58 | 1 | 158 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-58 | 1 | 158 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-58 | 1 | 158 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-58 | 1 | 158 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 7e-58 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 7e-58 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 7e-58 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 7e-58 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 7e-58 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 7e-58 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 7e-58 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 7e-58 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 6e-58 | 1 | 158 | 12 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 6e-58 | 1 | 158 | 12 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KC847198 | 0.0 | KC847198.1 Gossypium hirsutum NAC domain protein NAC21 mRNA, complete cds. |
