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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_01989_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
NAC |
Protein Properties |
Length: 151aa MW: 17753.2 Da PI: 8.763 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_01989_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 181.6 | 1.9e-56 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratks 80
+ppGfrFhPtdeelv +yL+kkv+++k++l +vike+d+y++ePwdL+++++ e++ewyfFs++dkky+tg+r+nrat +
Cotton_A_01989_BGI-A2_v1.0 9 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIKEIDLYRIEPWDLKERCQIgceEQNEWYFFSHKDKKYPTGTRTNRATMA 90
69****************************.9***************964333333566************************ PP
NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
g+Wkatg+dk+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle
Cotton_A_01989_BGI-A2_v1.0 91 GFWKATGRDKAVYD-KSKLIGMRKTLVFYKGRAPHGQKSDWIMHEYRLE 138
**************.999*****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 151 aa
Download sequence Send
to blast |
MMESTESCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV IKEIDLYRIE PWDLKERCQI 60 GCEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKSKLIG MRKTLVFYKG 120 RAPHGQKSDW IMHEYRLESD DHASPKASPH T
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC847220 | 1e-127 | KC847220.1 Gossypium hirsutum NAC domain protein NAC43 mRNA, complete cds. |