PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_01949_BGI-A2_v1.0

Common Name

F383_31285

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 332aa MW: 37109.8 Da PI: 8.3915

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01949_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	9.8e-10	168	215	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L++l+P + +k Ka +L + ++Y++sLq Cotton_A_01949_BGI-A2_v1.0 168 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 215 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.16E-11	162	219	No hit	No description
SuperFamily	SSF47459	1.83E-17	162	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.993	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-17	164	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-7	168	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.7E-11	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MATYSFQSHP FLLDSIFLPN TSTTKVSGFV EEGNIINPNC FPQFYQDSPV GPMLHQSNCL 60 DHSSNEPSTV TKKQSTDDGS STAVDKLESG EQVTQKKRTR NGTTSNSAQF KGAKEGKTKK 120 QKKCNDGLKN EKKGCNSKAD KKAQEKATEQ PPTGYIHVRA RRGQATDSHS LAERVRREKI 180 SERMKTLQRL VPGCDKVTGK ALMLDEIINY VQSLQNQVEF LSMKLASLSP MFYDFGVDLE 240 TLMIRPERVS STETSPLPMP CPQQCNPIQT TIAPSHNYPL LDVSTALFLQ QGLRPNLFSH 300 SQDNGSLLWD VEDQRQKIFN SSQLNDNLCS FH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636232.1	0.0	PREDICTED: transcription factor bHLH137-like
TrEMBL	A0A0B0N1M1	0.0	A0A0B0N1M1_GOSAR; Transcription factor protein
STRING	Gorai.007G044400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8796	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	2e-63	bHLH family protein