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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_01939_BGI-A2_v1.0 |
Common Name | F383_08767 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
SBP |
Protein Properties |
Length: 374aa MW: 41572.6 Da PI: 8.5456 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_01939_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 128.4 | 2.7e-40 | 94 | 171 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+C v++C++dls++++yhrrhkvCe hsk+++v+++gl+qrfCqqCsrfh+l+efD++krsCr rL++hn+rrrk+q+
Cotton_A_01939_BGI-A2_v1.0 94 VCLVDECNTDLSNCRDYHRRHKVCELHSKTAEVMINGLKQRFCQQCSRFHSLEEFDNGKRSCRARLDRHNRRRRKPQP 171
6**************************************************************************987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 374 aa
Download sequence Send
to blast |
MDWNLKATSW DFTEFVEETV SNADTDIING NESNSYKLVN SIGDFRVDLK LGQVGNSGEL 60 PSNKWKEPRV LKMESSSSSS KKARPTNIGT HPVVCLVDEC NTDLSNCRDY HRRHKVCELH 120 SKTAEVMING LKQRFCQQCS RFHSLEEFDN GKRSCRARLD RHNRRRRKPQ PDPLSHSRSY 180 FSNYQGSQML PFSSLQVYPS TSVVKTIWPE SRYLNLKQPP AKQNLLLGSS SSNYREGKQQ 240 CSFLQGKNQT PAKASICQPV LGRVAPFSEG NGGCQSMLCD RLTTQVRDSD CALSLLSSPL 300 SHTSGIGLSN MVQPQSFPLV QSLGPSLQDH IIEPMGSVVA NGRETTVHGS GMFHMGSGGS 360 SASEPPENLG YHWQ
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 151 | 168 | KRSCRARLDRHNRRRRKP |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ622326 | 0.0 | KJ622326.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL18) mRNA, complete cds. |