PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01939_BGI-A2_v1.0
Common NameF383_08767
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 374aa    MW: 41572.6 Da    PI: 8.5456
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01939_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.7e-4094171178
                                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                 +C v++C++dls++++yhrrhkvCe hsk+++v+++gl+qrfCqqCsrfh+l+efD++krsCr rL++hn+rrrk+q+
  Cotton_A_01939_BGI-A2_v1.0  94 VCLVDECNTDLSNCRDYHRRHKVCELHSKTAEVMINGLKQRFCQQCSRFHSLEEFDNGKRSCRARLDRHNRRRRKPQP 171
                                 6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-3290156IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.68492169IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-3793174IPR004333Transcription factor, SBP-box
PfamPF031103.2E-3095168IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDWNLKATSW DFTEFVEETV SNADTDIING NESNSYKLVN SIGDFRVDLK LGQVGNSGEL  60
PSNKWKEPRV LKMESSSSSS KKARPTNIGT HPVVCLVDEC NTDLSNCRDY HRRHKVCELH  120
SKTAEVMING LKQRFCQQCS RFHSLEEFDN GKRSCRARLD RHNRRRRKPQ PDPLSHSRSY  180
FSNYQGSQML PFSSLQVYPS TSVVKTIWPE SRYLNLKQPP AKQNLLLGSS SSNYREGKQQ  240
CSFLQGKNQT PAKASICQPV LGRVAPFSEG NGGCQSMLCD RLTTQVRDSD CALSLLSSPL  300
SHTSGIGLSN MVQPQSFPLV QSLGPSLQDH IIEPMGSVVA NGRETTVHGS GMFHMGSGGS  360
SASEPPENLG YHWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27941681084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151168KRSCRARLDRHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223260.0KJ622326.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635398.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A0B0NQY80.0A0A0B0NQY8_GOSAR; Squamosa promoter-binding-like protein 13
STRINGGorai.007G043500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-55SBP family protein