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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_01813_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
NAC |
| Protein Properties |
Length: 340aa MW: 39456.3 Da PI: 4.9166 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_01813_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 149.2 | 2e-46 | 65 | 190 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyW 83
ppG+rF P deelv +yLkkkv + +l+ + i ev++y+++P++L + +ekewyfF++rdkky++g+r+nra+ gyW
Cotton_A_01813_BGI-A2_v1.0 65 PPGYRFCPLDEELVLYYLKKKVLNLPLPQ-NRIVEVNLYQYNPERLAeLYKQYGEKEWYFFTPRDKKYRNGTRPNRAAMGGYW 146
9*************************999.77**************8334455899*************************** PP
NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
katg d+ev k++ vg +k Lvfykgr pkg kt+W+mheyr+
Cotton_A_01813_BGI-A2_v1.0 147 KATGADREVRF-KDRIVGYRKALVFYKGRPPKGDKTSWIMHEYRV 190
**********9.8899***************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MEVEPKRELC DTNQTPEKTP PLSLHHASSS DALGIVEAPE NEEPIVNGTN NKDKIDDDGY 60
LDSFPPGYRF CPLDEELVLY YLKKKVLNLP LPQNRIVEVN LYQYNPERLA ELYKQYGEKE 120
WYFFTPRDKK YRNGTRPNRA AMGGYWKATG ADREVRFKDR IVGYRKALVF YKGRPPKGDK 180
TSWIMHEYRV NDPPPLCSKK EGYTDMRLDD YVLCRIYKKV DKSGRTQTKT EDGLALTQKQ 240
ERDEMMGSED TMNYLSTMGM GMGGNFMNQA FPEFQYIFND QFPSSFPTKY LNDRLEEDVW 300
SFDFPPQLDV SVEGLINVDN VFSPDTANKN STNSEMNTRD
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-50 | 63 | 219 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-50 | 63 | 219 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-50 | 63 | 219 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-50 | 63 | 219 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-50 | 63 | 219 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 3e-50 | 63 | 219 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 3e-50 | 63 | 219 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 3e-50 | 63 | 219 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 3e-50 | 63 | 219 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 3e-50 | 63 | 219 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 3e-50 | 63 | 219 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 3e-50 | 63 | 219 | 19 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 2e-50 | 63 | 219 | 16 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 2e-50 | 63 | 219 | 16 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC847253 | 0.0 | KC847253.1 Gossypium hirsutum NAC domain protein NAC76 mRNA, complete cds. |
