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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_01790_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
GRAS |
Protein Properties |
Length: 472aa MW: 52956.9 Da PI: 6.2024 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_01790_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 470.5 | 9.1e-144 | 47 | 469 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83
l++lLl+cA++v++g+le+a+ +L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ + see+ ++kl
Cotton_A_01790_BGI-A2_v1.0 47 LIHLLLTCANHVANGSLENANIALEQISQLASPDGDTMQRMAAYFTEALADRILKAWPGLHKALNSTRIT--LLSEEILVRKL 127
689*************************************************************999987..7********** PP
GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
f+e++P+lk++++++NqaI ea+ege++vHiiD+++ +++QW+aL+qaL++Rpegpp+lRiTg+++ +ke l ++++r
Cotton_A_01790_BGI-A2_v1.0 128 FFELFPFLKVAFVLTNQAIIEAMEGEKMVHIIDLNAAEPAQWVALIQALSARPEGPPHLRITGIHQ----QKEVLDQMAHRVI 206
******************************************************************....9************ PP
GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................................... 214
+ Ae+l++pf+fn+ v+ +le+l++++Lrvk+gEala+++vlqlh++l
Cotton_A_01790_BGI-A2_v1.0 207 EEAEKLDIPFQFNP-VVCKLENLDVDKLRVKTGEALAISSVLQLHSFLtsddellrkksplgsknlngihlqralqmnqstlg 288
**************.6888**************************************************************** PP
GRAS 215 ......................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
++s+ + + d++L+++++lsPk++vv+eq+++hn+++++er+le+l+ y+alfd+ e+++
Cotton_A_01790_BGI-A2_v1.0 289 ellekdmvngyspspdsassspQSSTGSV-KVDSFLNALWGLSPKLMVVTEQDSNHNGSTLMERLLESLHSYAALFDCSESTV 370
*****************987753333333.47*************************************************** PP
GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
+r+s er kvE++l+g+ei+n++acegaer+erhe+lekW +rl+ aGF++vpls++ + a++ll+ ++ dgy+++ee+g++
Cotton_A_01790_BGI-A2_v1.0 371 SRTSLERLKVEKMLFGEEIKNIIACEGAERKERHEKLEKWIQRLDLAGFGNVPLSYYGMLHARRLLQGYNCDGYKMKEENGCI 453
*********************************************************************************** PP
GRAS 359 vlgWkdrpLvsvSaWr 374
+++W+drpL+svSaWr
Cotton_A_01790_BGI-A2_v1.0 454 IICWQDRPLFSVSAWR 469
***************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 472 aa
Download sequence Send
to blast |
MFQDESSSVT SSSSPLQVFS MMSLSPNLGS PYPWLRELKS EERGLYLIHL LLTCANHVAN 60 GSLENANIAL EQISQLASPD GDTMQRMAAY FTEALADRIL KAWPGLHKAL NSTRITLLSE 120 EILVRKLFFE LFPFLKVAFV LTNQAIIEAM EGEKMVHIID LNAAEPAQWV ALIQALSARP 180 EGPPHLRITG IHQQKEVLDQ MAHRVIEEAE KLDIPFQFNP VVCKLENLDV DKLRVKTGEA 240 LAISSVLQLH SFLTSDDELL RKKSPLGSKN LNGIHLQRAL QMNQSTLGEL LEKDMVNGYS 300 PSPDSASSSP QSSTGSVKVD SFLNALWGLS PKLMVVTEQD SNHNGSTLME RLLESLHSYA 360 ALFDCSESTV SRTSLERLKV EKMLFGEEIK NIIACEGAER KERHEKLEKW IQRLDLAGFG 420 NVPLSYYGML HARRLLQGYN CDGYKMKEEN GCIIICWQDR PLFSVSAWRC RK
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | DQ908349 | 0.0 | DQ908349.1 Gossypium hirsutum clone LIB5327-014-A1-N1-G10_Gh410 microsatellite sequence. |