PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01742_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 502aa    MW: 55189.9 Da    PI: 10.0486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01742_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000147494323
                                ETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                C++C+k F r  nL+ H r H
  Cotton_A_01742_BGI-A2_v1.0 74 CEICNKGFQRDQNLQLHRRGH 94
                                *******************88 PP
2zf-C2H211.90.00067148170123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC++C+k +  +s+ k H + +
  Cotton_A_01742_BGI-A2_v1.0 148 WKCEKCSKKYAVQSDWKAHSKIC 170
                                 58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.67E-77194No hitNo description
Gene3DG3DSA:3.30.160.602.3E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.117294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8247294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355100113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.67E-7143168No hitNo description
SMARTSM00355140148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSHDGISNSI PSTIRGLTQQ PNPNPNPTLS VNPSKKKRNL PGTPGKSVNF HSYPDAEVIA  60
LSPKSLMATN RFLCEICNKG FQRDQNLQLH RRGHNLPWKL KQRTNKEVRK KVYICPEKTC  120
VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKIC GTREKDSFIT  180
HRAFCDALAE ESGRFTSVST TTMNPSAFTN DLTHIGGADN YETGFRPEFA SGSELVDNGL  240
QKPRLQLWLD QANSQLNPIG IQSNANAFLA PKSTSLPELG IAAAPMNMFG SLSQSQQWLS  300
QYPQASFPGA NLSMSSALQR GPKQEENKGD LSESITSLYS NNTQNSLRQN HTHMSATALL  360
QKAAQMGSTR SNPTITNSGL FGLMSSPPST IPSPINDHNK NEAYYKLFKQ ANQSENINEV  420
VSSLPSTQAA IIKDGSFVNN ASMKANERQG GQAVASKLNT NANEVEASLT RDFLGVGSQS  480
SRPFFQQEFA KFASMGSVQP WS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-25144199369Zinc finger protein JACKDAW
5b3h_F8e-25144199369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198110KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5775698e-91JX577569.1 Gossypium hirsutum clone NBRI_GE9421 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485236.10.0PREDICTED: protein indeterminate-domain 9
SwissprotQ944L31e-102IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBLA0A2P5Y2Z20.0A0A2P5Y2Z2_GOSBA; Uncharacterized protein
STRINGGorai.006G120000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-90C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]