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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01720_BGI-A2_v1.0 | ||||||||
Common Name | F383_04683, F383_15617 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 680aa MW: 78094.9 Da PI: 7.8553 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.4 | 1.8e-21 | 63 | 156 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevt 79 +fY+eYAk++GFs+r+++++ + + t+r fvC + g++ ++ +++k +r+r+++r+gC+a l+++k + ++w+vt Cotton_A_01720_BGI-A2_v1.0 63 EFYSEYAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLNDSKPQRNRKSSRCGCQAYLRISKVTdlgPAEWRVT 145 6**************9998877356667999**************9999**********************9977779***** PP FAR1 80 kleleHnHela 90 ++++HnHel Cotton_A_01720_BGI-A2_v1.0 146 GFVNHHNHELL 156 *********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.4E-18 | 63 | 156 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.3E-21 | 279 | 370 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.705 | 557 | 590 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.0E-7 | 560 | 588 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.2E-6 | 565 | 592 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MMSEDAGQML VMYDDPSDQR SLSLDETSST EESPDEARLS LETTADSVPY IGQRFATHDA 60 AYEFYSEYAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTLN DSKPQRNRKS 120 SRCGCQAYLR ISKVTDLGPA EWRVTGFVNH HNHELLEPNQ VRFLPAYRTI SDADKNRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKSDQEDESI DLLRMCRNNK 240 DKDPNFKFEY TLDSNNRLDN IAWSYASSVQ SYEIYGDAVV FDTTHRLTVF DMPLGIWVGV 300 NNYGMPCFFG CVLLREENSR SFSWALKAFL GFMNGKAPQT ILTDQNMYLK EAIAIEMPST 360 KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVDFFGLHTN 420 RHIANLFALR TLWALPYLRS HFFAGMTTTG HSKAINSFIQ RFLSAQTRLA QFVEQVAVAV 480 DFKDQAAEQQ TMQQNLQNIC LKTGAPMESH AASVLTPFAF SKLQEQLVLA AHYASFQMDD 540 GFLVRHHTKL EGGRKVYWVP REGIISCSCH QFEFSGILCR HALRVLSTGN CFQIPDRYLP 600 LRWRRISTSP AKLHQSSSSD HMERIQLFQS MVSTLVTESA KSKERLDIAT EQVSILLSRI 660 REQPVASQGA RDISPIHRNL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017612082.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_017612083.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_017612084.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A0B0PVA0 | 0.0 | A0A0B0PVA0_GOSAR; Far1-related sequence 11-like protein | ||||
STRING | Gorai.006G118900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1765 | 26 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Publications ? help Back to Top | |||
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