PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_01686_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 117aa MW: 13383.8 Da PI: 11.0535

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01686_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.1	8.1e-19	5	103	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvv 81 f+k+l s + + +rl+lp k++++ + + l ++d +gr+W + +++r+++ vl++GW +Fvk + Lk gD ++ Cotton_A_01686_BGI-A2_v1.0 5 FVKIL--SKTDTGKRLSLPTKYMKHLpRIRRGHAVNLAVMDAQGRQWHFGYTIRRNGHPkPVLSAGWHDFVKGKYLKPGDQII 85 88999..66666677******6559666667889***********885554445******************* PP EEE-SS.SEE..EEEEE- CS B3 82 Fkldgr.sefelvvkvfr 98 Fkl+ + ++ ++++v r Cotton_A_01686_BGI-A2_v1.0 86 FKLEANdADALYTIGVKR 103 *977677777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.224	3	105	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.7E-20	4	95	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.54E-17	4	92	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	7.1E-15	5	104	IPR003340	B3 DNA binding domain
CDD	cd10017	3.69E-20	5	103	No hit	No description
SMART	SM01019	6.6E-10	5	102	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MALQFVKILS KTDTGKRLSL PTKYMKHLPR IRRGHAVNLA VMDAQGRQWH FGYTIRRNGH 60 PKPVLSAGWH DFVKGKYLKP GDQIIFKLEA NDADALYTIG VKRRIRLLGT EVWTAVC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472265.1	1e-77	PREDICTED: B3 domain-containing transcription factor VAL3-like
TrEMBL	A0A2P5Y1T8	8e-80	A0A2P5Y1T8_GOSBA; Uncharacterized protein
STRING	Gorai.003G022700.1	2e-79	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22071	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21550.1	1e-12	VP1/ABI3-like 3