PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01632_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 207aa MW: 23716.9 Da PI: 7.4128 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 47 | 101 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Cotton_A_01632_BGI-A2_v1.0 47 KKRKLSQEQVDLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 101 45699************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 117.7 | 6.3e-38 | 47 | 138 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 kkr+ls+eqv lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ ++ ++ e++rLe+ev Cotton_A_01632_BGI-A2_v1.0 47 KKRKLSQEQVDLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKTIHEGVVLEKCRLESEV 129 9********************************************************************************** PP HD-ZIP_I/II 85 eeLreelke 93 +L+++l+e Cotton_A_01632_BGI-A2_v1.0 130 LKLKDQLRE 138 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.827 | 42 | 102 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 45 | 106 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-16 | 47 | 101 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.31E-17 | 47 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 49 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.83E-15 | 49 | 103 | No hit | No description |
PRINTS | PR00031 | 1.3E-5 | 73 | 82 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 77 | 100 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 82 | 98 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MALITQMYPC IYTQVAPQQG EISKPRRRRK KNKGGESGAA TAAETAKKRK LSQEQVDLLE 60 LNFGNEHKLE SERKDRLASE LGLDPRQVAV WFQNRRARWK NKKLEEEYSK LKTIHEGVVL 120 EKCRLESEVL KLKDQLREAE KEIQGLTERV DGVSSNSPSS SSVLSMEAMD PPPFLGEFGV 180 QGFEDQDVFY IGQNSYINGM EWMNLYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 49 | RKKNKGGESGAATAAETAKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641142.1 | 1e-153 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 1e-76 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A0D2QEE4 | 1e-150 | A0A0D2QEE4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G016600.1 | 1e-151 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 8e-67 | homeobox protein 40 |
Publications ? help Back to Top | |||
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