PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01628_BGI-A2_v1.0
Common NameF383_05716
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 546aa    MW: 56440.4 Da    PI: 8.6944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01628_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056082123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                ++C++C+k F r  nL+ H r H
  Cotton_A_01628_BGI-A2_v1.0 60 FVCEICNKGFQRDQNLQLHRRGH 82
                                89*******************88 PP
2zf-C2H211.10.0013136158123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC +C+k +  +s+ k H + +
  Cotton_A_01628_BGI-A2_v1.0 136 WKCDKCSKKYAVQSDWKAHSKIC 158
                                 58*****************9876 PP
3zf-C2H211.50.00096166184523
                                 TTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                 dCg++Fsr++++ +H   +
  Cotton_A_01628_BGI-A2_v1.0 166 DCGTVFSRRDSFITHRAFC 184
                                 9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.56E-75982No hitNo description
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355190101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.56E-7131156No hitNo description
SMARTSM00355150136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MPVDDNSSTV SGDASVSSTG NQNLPLKSTV KKKRNLPGMP DPDAEVIALS PTTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEVKKRV YVCPEPTCVH HDPSRALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT REYKCDCGTV FSRRDSFITH  180
RAFCDALAVE SAKTQTNPSS ESDPKVQAAD SSPRRSPPAA SPPVSAPSAI TSSDIRIQSS  240
VLAEDPSTVV EEAPAPAPAP SAPPAGLNGS SSSSVSLVSS GCNSSSSSVF SNLFTSTTVS  300
TSIHPPQPLA PALPLVGLNG SCSGSVSLVS SGASSSSSSG VFASLFASST VSASIQPPQT  360
PALTNLIRAD LAPSTSIEPI SLCLSTSHGS SIFGTTGQER RQHAPPLQPA MSATALLQKA  420
AQMGAAASNA SLLRGLGVVS SSAPQENLQW GQAQVDPDNA SIAAGLGLGL PCDGSSGLKE  480
LMMGTPVFGP KQTTLDFLGL GVAAGGNPNA SLSALITSIG SGFDATTAAA SVRGGDYTSK  540
DIGRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32132196367Zinc finger protein JACKDAW
5b3h_F2e-32132196367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622160.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A0B0PEB20.0A0A0B0PEB2_GOSAR; Zinc finger MAGPIE-like protein
STRINGGorai.003G016200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-108C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]