PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01363_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 239aa    MW: 27108.1 Da    PI: 9.6101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01363_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-1369119355
                                 HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                 + h e+Er+RR+++ s ++ Lr+llP       ++K s ++   +Av+YIk+L+
  Cotton_A_01363_BGI-A2_v1.0  69 KLHREIERQRRQDMASLYASLRSLLPGeY---IKGKRSMSDQMNEAVNYIKHLE 119
                                 67*************************77...********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.24666118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-1166123No hitNo description
SuperFamilySSF474593.93E-1467135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1069119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1170134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-672124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MFPLHQSDDL VYQIFSHTKQ HKIPQDPITG HTVVVESNPI ISNPTVKNRG RKICHMEGGA  60
GSDKYKKQKL HREIERQRRQ DMASLYASLR SLLPGEYIKG KRSMSDQMNE AVNYIKHLEK  120
KVKDLDAKRH ELKRVSDLAS VGSRTKPAAA SISNHCFIIR PCLIGIEIMF RCGVEDQDLS  180
LSRVLAVLVD EGLRVVSCFS TKSEEFLFHT IQTEVNDPTS VNISRLQQKL PQSSEVTKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636424.11e-179PREDICTED: transcription factor bHLH118
SwissprotQ9FLI13e-38BH036_ARATH; Transcription factor bHLH36
TrEMBLA0A2P5WTS11e-176A0A2P5WTS1_GOSBA; Uncharacterized protein
STRINGGorai.008G282400.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-40bHLH family protein