PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01362_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 233aa    MW: 25788.2 Da    PI: 4.9789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01362_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-1160112155
                                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                 ++ +h  +Er+RR+++ + ++ Lr llP       ++K   ++    Av YIk+Lq
  Cotton_A_01362_BGI-A2_v1.0  60 KKLMHRDVERQRRQEMATLYASLRNLLPLeY---IKGKRAISDHMNGAVMYIKYLQ 112
                                 5789*************************77...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1356127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.28E-1058116No hitNo description
PROSITE profilePS5088812.6959111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-860112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1060130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDELFLFQFP SIPNPQNETP QDKVLDYVVP MDGSGNTHLY SSMGSGAAGN DDDDDNGEKK  60
KLMHRDVERQ RRQEMATLYA SLRNLLPLEY IKGKRAISDH MNGAVMYIKY LQKRVSELSY  120
KRDELKKVLN STGFDHGMSY DGAVLSTAVV HQSLDGGVEL VISTGFGAGA LTLSRVLELL  180
VQEGLDVVSC VSTRINGGLV HTIQSEVIDL TLVDLPRLEQ KLSEEISSLN RIS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6182801e-143JX618280.1 Gossypium hirsutum clone NBRI_GE63693 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636866.11e-171PREDICTED: transcription factor bHLH36-like
SwissprotQ9STJ61e-44BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A0D2Q3D91e-153A0A0D2Q3D9_GOSRA; Uncharacterized protein
STRINGGorai.008G282300.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.13e-45bHLH family protein