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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01361_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 824aa MW: 93737 Da PI: 7.2349 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 29.3 | 2.2e-09 | 123 | 182 | 17 | 76 |
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 ++ + +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+ek++++++ Cotton_A_01361_BGI-A2_v1.0 123 VQVQPSRGKTRADKDKEVAEFLNKHGINRDAKTAGTKWDNMLGEFRKVYEWEKGEKERVG 182 5567789999*******************************************9866555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF56112 | 1.93E-17 | 680 | 814 | IPR011009 | Protein kinase-like domain |
CDD | cd00180 | 7.85E-14 | 680 | 815 | No hit | No description |
Gene3D | G3DSA:1.10.510.10 | 8.1E-9 | 681 | 816 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 824 aa Download sequence Send to blast |
MGDNTTGDGT RKQTVPQQTQ QHFSASSPIE PLECVNPKKP RYFSSDKWKQ APMAESTQAR 60 VAAGSSSDTY SSPPHSPTII KPEGDQFQHQ LRKGKYVSPV WKPNEMLWLA RAWRIQYLGG 120 VGVQVQPSRG KTRADKDKEV AEFLNKHGIN RDAKTAGTKW DNMLGEFRKV YEWEKGEKER 180 VGKSYFRLSP YERKLHRLPA SFDEEVFEEL VQFMVPRDGR TVGSRALPMP PPVMTTSLLG 240 FDTALDGGLL GLYSSSSSKE LRRIGKIRMT WEESVTLWAE EGEHHRGRVK LQCSSFLNAD 300 ELIFFDDAMV GSTMEAFEDT PLKGFSVDTF VNGQQVKVFG RRKSAQHPFV EPSIRSMPPM 360 EFQDPTDFYM ACLRVPPTTL PSLFELSWHL QEPPPEDYRF PLRRDVYRDL PPGKEVMFTA 420 SSELLDCRAM VYDMLGPMIR TNTSPSAASA TDRDSFIGLW DDCINRVVSK FCSVEMVIIR 480 KPSSPSTDQP LRDRWPNVTG FVKNFCLWRG EETDRSREGQ LDPSSTIVEK LLWSYMDLPY 540 ILGYYAVGYM VTFCAISRSE DRVIMTDLYS VDLSFPSERL KALVPCYRIA GLLPLLADRC 600 LNRVLDMQVP FSDFERINLG NGDIIEMTPN TVTRSFSSKK KWAMVKEIYD MLDQRIPHAE 660 FIYRAAEIDS TLVFKPRGCK FKPLNYDQLV EALKYVTKAL VALHDLSFMH RDLSWDKVLR 720 RCDGENEWFV TGFDEAVGAP QIYPHPVAST EARGTHAPEM VRGLHGVKVD VWGVGHLVKT 780 CGLTNLPKML RELQSRCLDQ NPDQRPTAAD CYHHLLSASS TATY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636049.1 | 0.0 | PREDICTED: uncharacterized protein LOC108478139 | ||||
TrEMBL | A0A0D2TE92 | 0.0 | A0A0D2TE92_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G282200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8356 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 4e-08 | Trihelix family protein |