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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cotton_A_01340_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
LBD |
Protein Properties |
Length: 137aa MW: 15605.8 Da PI: 9.0104 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_01340_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 125.7 | 2.3e-39 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83
+CaaC++lrr+C++dC+++pyfp ++p++fa +h+++Gasnv kll++lp + r++a++sl+ eA+ r++dPvyG+vg+i+ l
Cotton_A_01340_BGI-A2_v1.0 5 RCAACRYLRRRCPPDCIFSPYFPPNNPQRFASIHRIYGASNVAKLLQRLPSHLRTQAADSLYLEAQYRIEDPVYGCVGLISLL 87
6********************************************************************************** PP
DUF260 84 qqqleqlkaelallkee 100
qqq++ + +la++++e
Cotton_A_01340_BGI-A2_v1.0 88 QQQIHDIERQLAMTQAE 104
************99987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 137 aa
Download sequence Send
to blast |
MNPSRCAACR YLRRRCPPDC IFSPYFPPNN PQRFASIHRI YGASNVAKLL QRLPSHLRTQ 60 AADSLYLEAQ YRIEDPVYGC VGLISLLQQQ IHDIERQLAM TQAEIAFRAR HPQAVEGNLL 120 NNVGNPSFSN QASSWFM
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