PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01249_BGI-A2_v1.0
Common NameF383_30400
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 485aa    MW: 51703.8 Da    PI: 6.8332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01249_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12281326555
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Cotton_A_01249_BGI-A2_v1.0 281 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 326
                                 99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-17274336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.78E-13274330No hitNo description
PROSITE profilePS5088817.39276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16278335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9281326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MQPCSREMQA MNSLLSPTQQ IPLQDLQPNG NSGTHQAQIH NPQFDPTSSH DDFLDQMLST  60
LPSCSWSDLK SPWDPPKSDE TPPSNPDNNV GFHYDEILAS KLRQHQINGG GGGTTAAMKM  120
MMQQQMMLPG RPIAAAGGGG LTMPLHNDIV DGSSFKSPNQ QGGEGSVQAL YNGFGAGSLH  180
GTNNQSPNQP QHFHHPQAYL LFSFTFSPKY HEDPKWANDT YPVIHKYLFI VQGGNMQTQS  240
FGATAGTVMN QSQASGSTTG GAPAQPKQRV RARRGQATDP HSIAERLRRE RIAERMKALQ  300
ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA AAVAPLVADM PSEVGDCVQT  360
TAGGGGSLQR NSNGNQPSAN NDSLTVTEHQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT  420
AISTATCHSR NPMINKGSSS NHPLLQSNGD GPSSPSMSVL TVQSATMGNG GLDGSAKDAA  480
SVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285290RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627595.10.0PREDICTED: transcription factor bHLH69-like
TrEMBLA0A0B0PHX90.0A0A0B0PHX9_GOSAR; Transcription factor bHLH66-like protein
STRINGGorai.009G055200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-71LJRHL1-like 1