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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01099_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 234aa MW: 26249.8 Da PI: 5.6744 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.5 | 1.9e-18 | 180 | 216 | 1 | 35 |
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ nC+t +Tp+WR+gp g+ktLCnaCG++yrk+++ Cotton_A_01099_BGI-A2_v1.0 180 CTnyNCNTNDTPMWRKGPLGPKTLCNACGIKYRKEEE 216 55559*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.8E-11 | 176 | 227 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.33E-12 | 176 | 225 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-13 | 176 | 224 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 4.9E-16 | 180 | 216 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 5.15E-10 | 184 | 211 | No hit | No description |
PROSITE profile | PS50114 | 11.596 | 184 | 230 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDNSPWFNQA ATEMNGQNND NNNAGNSRVD LTLKLGLPLF DSLQNPALYH NIQQGPVNEG 60 AMAEAPQQHF NGSQYAAWLS PDQIGNSSSA HNMNYPNVFN NFSGPSVEFP PYDTINSYNY 120 VPPPPPPPLH ELPPNSYTLL DVPPRRAAQL QQREFESSSG WGLGRGQRGY GLYNDPNKRC 180 TNYNCNTNDT PMWRKGPLGP KTLCNACGIK YRKEEEKRKT KEGRDGEQQF DLNE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX598613 | 6e-50 | JX598613.1 Gossypium hirsutum clone NBRI_GE35854 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630258.1 | 1e-174 | PREDICTED: GATA transcription factor 29 | ||||
Refseq | XP_017630259.1 | 1e-174 | PREDICTED: GATA transcription factor 29 | ||||
TrEMBL | A0A0D2TL01 | 1e-136 | A0A0D2TL01_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G070200.1 | 1e-136 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10652 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 4e-14 | GATA transcription factor 29 |