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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01077_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 752aa MW: 87357.2 Da PI: 7.5251 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.6 | 3.2e-26 | 29 | 114 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +Y++YAk+vGF + k +s++s+ ++e+++++f+C ++g++++++++ ++r++ ++gCka+++vk+++dgkw+v+++ +e Cotton_A_01077_BGI-A2_v1.0 29 YYKDYAKSVGFGTAKLSSRRSRVSKEFIDAKFTCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFIKE 107 9***************************************999877....9******************************** PP FAR1 85 HnHelap 91 HnHel p Cotton_A_01077_BGI-A2_v1.0 108 HNHELLP 114 ****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.2E-24 | 29 | 114 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.7E-30 | 226 | 319 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.781 | 506 | 542 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.3E-9 | 513 | 540 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.4E-8 | 517 | 544 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MDSSIGTSDI ILASHRELEF ESHEAAYSYY KDYAKSVGFG TAKLSSRRSR VSKEFIDAKF 60 TCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFIKEHNH ELLPAQAHFF 120 RSHRNVDPLK TDVGRKRKNL ASVSKLFSAY QNIDFLEGYM RNQHDKGRSL VLEEGDAQVL 180 LELLMHMQEE NPKFFYAVDL NEEHRLRNVF WVDAKGMEDF SNFGDVVSFD TTYFTNKYKI 240 PLVLFIGVNH HIQPTLLGCA LIADETVYTF LWLMQTWFIA MGERAPQVML TDQNNAIKAA 300 VATVFPTTRH CFCLWHVLEK LPRHLEYLSL WHDSLMLKLD KCIYRSWTED QFEKRWWKMV 360 DKFHLREMQW VLSLYEDRKR WVPVFMRDIS FAGFSTALRS DSLSSSFDKY VHGETSLREF 420 IEHYRVILED RYEEEAKADF NAWHETPELK SPSPFEKQIS LVYTHEVFKK FQVEVLGAAA 480 CHLKKENEDQ VPATYSVKDF EDNQNYMVEW NEAKSDIYCS CRSFEYKGYL CRHAIVVLQM 540 SGVFNIPSKY ILQRWTNAAL SRLPISQKLD EVQSKVRRYN DLCRRAIILS EEGSLSQESY 600 NLALSAIKEA LKQCASVNNS VENEYRPNTS IIRADSCVER VSQCVNTQEK AADPRMTNTT 660 KTCQSIETAL ERQINENNAT RKGKVSLAGA VNVGSQDGFH QMEMSDMRPT QLHNVMPPTQ 720 LHNMVPTMFT NVASTHFQNV AATHLHDNRL HR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017631722.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2 | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A1U8PI32 | 0.0 | A0A1U8PI32_GOSHI; protein FAR1-RELATED SEQUENCE 4-like isoform X2 | ||||
STRING | Gorai.009G072000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Publications ? help Back to Top | |||
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