PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00988_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 674aa    MW: 73727.6 Da    PI: 6.8664
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00988_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06269289526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 +C  f++ G C+ Gd C +aHg
  Cotton_A_00988_BGI-A2_v1.0 269 PCLEFRK-GACPKGDACDYAHG 289
                                 8999***.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.8E-1860197IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.75E-1674194IPR020683Ankyrin repeat-containing domain
SMARTSM002480.006276106IPR002110Ankyrin repeat
PROSITE profilePS5029715.93776156IPR020683Ankyrin repeat-containing domain
PfamPF136371.2E-877135No hitNo description
CDDcd002041.05E-1578193No hitNo description
SMARTSM002489.0E-4111143IPR002110Ankyrin repeat
PROSITE profilePS5008812.102111146IPR002110Ankyrin repeat
PROSITE profilePS5010312.831264291IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4264290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4269290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4295328IPR000571Zinc finger, CCCH-type
SMARTSM0035672299322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MCCGSKSELV PSNFTMEGEL QEHKIGAICK CSLLLELAAS NDLVAFKNEV EEKGLDLGEA  60
SLWYGRRIWS RKMGFEERTP LIIASMFGSV DVLKYIIGSG KIDVNDACGT DGATALHCAV  120
AGGSDSSVEI VKLLLDASAD ANRVDANGSK PIDLVVPALK SLSSSKRKVI ELLLKGVSGC  180
VLNEKDESEK TVLPQLFKEG SEKKEYPIDV SLPDINNGIY GTDDFRMYTF KVKPCSRAYS  240
HDWTECPFVH PGENARRRDP RKYPYSCVPC LEFRKGACPK GDACDYAHGI FESWLHPSQY  300
RTRLCKDEIA CARKVCFFAH KLEELRPVNA STGSAMPSPR SAVINAADMA NLSPLALGSS  360
ALPLPTTSTP PMSPLAVASS PKSGGLWHKQ VNLTPPTLQL PGSRLKTAFT ARDFDLEMQL  420
LALENHASQL QQQQLMDEIS SLSSPSCWTK EYSRLEDLKP TKLDDAFGSL DPSLQSPLKG  480
LSIESVTQTQ SQSRQNMNQF RASYPPNLSS SPVRKPSAFG FDSSAAVAAA VLNSRSSGFA  540
KRSQSFIDRG AMTGRAGLTT SANSKTMMSS NISDWSSPDG KLDWGIQGDE LNKLRKSVSF  600
GFRNNNPTAT ATTNMMPTDA DEPDVSWVHS LVKDTAPTEA RLHQQQRYSL SKGVRETLPP  660
WMEQMYIEQE QMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017620344.10.0PREDICTED: zinc finger CCCH domain-containing protein 29 isoform X1
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2P5XEH40.0A0A2P5XEH4_GOSBA; Uncharacterized protein
STRINGGorai.013G017600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein