PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_00928_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 144aa MW: 16162.4 Da PI: 8.2479

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00928_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Cotton_A_00928_BGI-A2_v1.0 23 FECKTCNRQFNSFQALGGHRASH 45 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.48E-9	21	92	No hit	No description
Pfam	PF13912	6.5E-13	22	47	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.21	23	45	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.076	23	50	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.1E-10	69	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.5	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.452	70	94	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MLLSQGGHRY EHAEIDSNPS RVFECKTCNR QFNSFQALGG HRASHKKPRL MEVDSEMSEN 60 QASPAKPKTH ECSICGLEFA IGQALGGHMR RHRGVLSENQ HEEPIVKKSN SRRVLCLDLN 120 LTPLENDLEL FKLGKGAPTI NFLL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017618702.1	1e-103	PREDICTED: zinc finger protein ZAT11-like
Swissprot	Q9SLD4	1e-33	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	A0A2P5WEV6	1e-101	A0A2P5WEV6_GOSBA; Uncharacterized protein
STRING	Gorai.013G023300.1	1e-101	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM531	28	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	4e-36	C2H2 family protein