![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_00894_BGI-A2_v1.0 | ||||||||
Common Name | F383_07504 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 1587aa MW: 173460 Da PI: 6.436 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 9.9e-09 | 809 | 850 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++ d + +G++ +++Ia + ++t +c+++++k Cotton_A_00894_BGI-A2_v1.0 809 PWTSEEKEIFMDKLAAFGKD-FRKIATFLD-HKTTADCVEFYYK 850 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 30.3 | 9.5e-10 | 1028 | 1067 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++ +R++ qck ++ Cotton_A_00894_BGI-A2_v1.0 1028 WTDEEKSVFIQAVSSYGKD-FAMISRCVR-TRSRDQCKVFFS 1067 *****************99.*********.********8776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.05E-13 | 793 | 854 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.53 | 805 | 856 | IPR017884 | SANT domain |
SMART | SM00717 | 1.6E-7 | 806 | 854 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-5 | 808 | 854 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.2E-6 | 808 | 850 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 11.174 | 1023 | 1074 | IPR017884 | SANT domain |
SMART | SM00717 | 1.0E-7 | 1024 | 1072 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.28E-10 | 1026 | 1074 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-6 | 1027 | 1068 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-7 | 1028 | 1067 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.59E-7 | 1028 | 1066 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1587 aa Download sequence Send to blast |
MPQEPLPWDR KDIYKDRKHE RAELQPPPLS AARWREASSM SSYQHGSFRE FARWGSADFR 60 RPPGHGKQGN WHLFPEDIGG HGYVPWRSSD KILDGETYRQ SVSRGDGKYG RSYSRDNNRG 120 SYYQRDWRGH SLETSNGSPN TSVRPHDVNN EQRSVDDMFT YPSRTHSDFV NTWNQLQKDQ 180 HDNRTCGVNG LGTGQRCERE NSLGSVDWKP LKWSRSGSLS SWGSGFSHSS SSKSLGGIDS 240 GEAKLELHQK NLAPVQSPSG DAAACVTSAP PSDETTSRKK PRLGWGEGLA KFEKKKDEGP 300 DTSINSGGAA ISLCNTEPNT SLNSNLVDKS PRVLGFSDCS SPATPSSVAC SSSPGVEEKS 360 FGKAANIDND VNNLCGSPSF GSQNQLEGSS FSLEKLDINS IINMGSSLID LLQSDEPSTM 420 DSSFVQSTAI NKLLLWKGDI LKALEMTESE IDSLETELKS SKDDPGRRCQ CPATSSSFPV 480 QENGKSCEEQ EAASSMIPQP ASLKIDPSND VLEVLQEANA DIKDGVIDSP GTATSDFMVS 540 SSLEKAESLC DVVKVQDCSG NSSSAQLTTM EQVILATDSC NEEAAAVVSG EGSVLVKIDN 600 EAHVPESSNS DAAGENMTCD VILTTNKELA NRASLVFKKL LPKDQYSIEI SEISNAVWGQ 660 ISSLIREKIA MRKRHLRFKE RVLTLKFKAF QYAWKEDMLS PAMRKYWAKS QKKYELSLRS 720 TYGGYQKHRS SYRSRVTSSA GNLVLEPTAE MINFTSKLLL DSHVKLYRNA LKMPALILDE 780 QEQLSRFISS NGLVEDPCAI EKERALINPW TSEEKEIFMD KLAAFGKDFR KIATFLDHKT 840 TADCVEFYYK NHKSECFKKT KKKLDLTKQG KSSANTYLLT SGKKWSKEFN AASIDVLGAA 900 SVIATHAESG MQKHQTSSSR IFFGGRYSKI SRADDRIANR SSSFDIIGND RETAAADVLA 960 GICGSLSSEA MSSCITSSVD PGESFHRDWK CHKVDSLFKR RSTSNVAQNV DDGTCSGESC 1020 GEMDPADWTD EEKSVFIQAV SSYGKDFAMI SRCVRTRSRD QCKVFFSKAR KCLGLDLIDP 1080 RTRNLGTPMS DDANGGGSDT ENACVLECLV VSSDKLGSKP EDLPSNIVCT NMDERNPTSK 1140 LILPTDLNVP DENDRKLVDH RDSEAVQTVD SDAGRAELIT ECSVDMNIDS KAGSLQVQKS 1200 VVALGNLNAG RDVTEQGVSV AVSAFLGAAA YPCIPSLDSV AESKPATSLY EHDTKCSAET 1260 SSQSICRMDS NKATDESVGK NSCSSFSLSA KGLHQIPPDL DSAKKPSVSN NSSANGSALH 1320 DSDALRCEKI CNLDRLSSTL DYKENETKQA QKSVREDESG RLSGKTSVNI TEPRRILRGY 1380 PLQVSTLKEM NGDVKGLATS KTGSAGPCLA QECYLQKCNS SKSAAELPLL VENLEQAKDR 1440 PKSHSRISDT ENPGRNGNVK LFGQILNSSS RDDKVSHFSK QNTKPSNLKL IGNNVDGNSK 1500 FDANNHVAEN VPKRSYGFWD GKRIQTGLSS LPDSSILMAK YPSAFANYPP TSSSQMEQQA 1560 LQTVVHSTDR TLNGVSFPSR EISSNNG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-17 | 768 | 858 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-17 | 768 | 858 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX578805 | 0.0 | JX578805.1 Gossypium hirsutum clone NBRI_GE10901 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017619121.1 | 0.0 | PREDICTED: uncharacterized protein LOC108463731 isoform X1 | ||||
Refseq | XP_017619122.1 | 0.0 | PREDICTED: uncharacterized protein LOC108463731 isoform X1 | ||||
TrEMBL | A0A1U8K4X3 | 0.0 | A0A1U8K4X3_GOSHI; uncharacterized protein LOC107913477 isoform X1 | ||||
STRING | Gorai.013G026300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5260 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G52250.1 | 0.0 | MYB family protein |