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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_00831_BGI-A2_v1.0 |
Common Name | F383_12543 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
NAC |
Protein Properties |
Length: 197aa MW: 22509.9 Da PI: 5.3465 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_00831_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 119.8 | 2.5e-37 | 10 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83
+ppGfrFhPtdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e k+wy++s+r++ nr t++gyW
Cotton_A_00831_BGI-A2_v1.0 10 VPPGFRFHPTDEELVVHFLQRKAALLPCHP-DVIPDLHLYPYDPWELDGKALGEGKQWYYYSRRSE--------NRNTRNGYW 83
69*************************999.99**************977778899******9865........788999*** PP
NAM 84 katgkdkevlsk.kgelvglkktLvfykgrap..kgektdWvmheyrl 128
ka g +++v+++ +++ vg+kk Lvf+ g+a+ g+ktdWvmheyrl
Cotton_A_00831_BGI-A2_v1.0 84 KAMGMEESVVNSsSSRRVGIKKYLVFFIGEAEggGGVKTDWVMHEYRL 131
*******9999867888**********7766511578*********98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 197 aa
Download sequence Send
to blast |
MGDNNSINKV PPGFRFHPTD EELVVHFLQR KAALLPCHPD VIPDLHLYPY DPWELDGKAL 60 GEGKQWYYYS RRSENRNTRN GYWKAMGMEE SVVNSSSSRR VGIKKYLVFF IGEAEGGGGV 120 KTDWVMHEYR LSDSDSSSST SRSSKRRGHN SKIDYSKWVI CRVHERSCST SDEEDGGMEL 180 SCLDEVFLSL DDDDEIS
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-38 | 10 | 171 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-38 | 10 | 171 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-38 | 10 | 171 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-38 | 10 | 171 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-38 | 10 | 171 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-38 | 10 | 171 | 17 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |