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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_00771_BGI-A2_v1.0 |
Common Name | F383_00685 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
B3 |
Protein Properties |
Length: 343aa MW: 39692.3 Da PI: 8.9301 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_00771_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 48.5 | 1.6e-15 | 5 | 95 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
ff +l+ s +l+ + l++p +f++++ + s+ l+ ++g +W+v + +k +++ ++++GW+eFv+ + +g f++F+++
Cotton_A_00771_BGI-A2_v1.0 5 FFHKLILSTTLQDRKLRIPDNFIKKFRDE--LSVAAALTVPDGHVWRVGI--KKVDNKAWFKEGWQEFVERYYISVGYFLIFRYE 85
788999999**************999755..999****************..99999**************************** PP
SSSEE..EEEEE CS
B3 86 grsefelvvkvf 97
g+s f v++f
Cotton_A_00771_BGI-A2_v1.0 86 GNSAF--SVSIF 95
*9999..88887 PP
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2 | B3 | 62.6 | 6.3e-20 | 241 | 331 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
vl ps+ + ++++lp fae+h +g++ ++l+ ++gr+W v++ yr+++ +++GW eF +n+L egD++vF+l
Cotton_A_00771_BGI-A2_v1.0 241 VLRPSYLYRGCIMYLPSCFAEQHlSGVSG---FIKLQLPDGRQWPVRCLYRGGR--AKFSQGWYEFTLENNLGEGDVCVFELL 318
78899******************866743...5***************666665..5699**********************9 PP
SSSEE..EEEEE- CS
B3 86 grsefelvvkvfr 98
+++ef l+v+vfr
Cotton_A_00771_BGI-A2_v1.0 319 RSREFVLKVTVFR 331
99*********98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MPRPFFHKLI LSTTLQDRKL RIPDNFIKKF RDELSVAAAL TVPDGHVWRV GIKKVDNKAW 60 FKEGWQEFVE RYYISVGYFL IFRYEGNSAF SVSIFNLYNS EINYQTNALV GNQYNLGRQY 120 PFEELEDDEC VSPALPNLFG GSKLNCINWS GEVNHHAPKG VNNQPIRGAE LPKLKKPGRK 180 KQKFEPSEED SSLGHEDDME MRNRFYESAS ARKRIVTAEE RERAINAAKA FEPTNPFCRV 240 VLRPSYLYRG CIMYLPSCFA EQHLSGVSGF IKLQLPDGRQ WPVRCLYRGG RAKFSQGWYE 300 FTLENNLGEG DVCVFELLRS REFVLKVTVF RVMESAGLMY RSQ
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 4e-76 | 204 | 334 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 4e-76 | 204 | 334 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |