PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00770_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 127aa    MW: 14722.2 Da    PI: 10.5334
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00770_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.7e-1718113397
                                 EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                          B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfv 80 
                                 k+ltp dv    rl++p   ++eh    +g+  +s + +++d+ +++W+++l+  +++  + vltkGW++Fvk  gLk+gD v
  Cotton_A_00770_BGI-A2_v1.0  18 KILTPTDVRV--RLSFPTATTREHfkllEGS--QSLDFQVRDKYSKVWTFRLCTgKNGHLKPVLTKGWRDFVKRMGLKVGDKV 96 
                                 6676666664..59***********977555..7889***************6644444459********************* PP

                                 EEEE-SSSEE..EEEEE CS
                          B3  81 vFkldgrsefelvvkvf 97 
                                 +F ++g+++ +l ++v 
  Cotton_A_00770_BGI-A2_v1.0  97 IFVVHGNHNDQLGIQVK 113
                                 ***99987666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-2113113IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-161598No hitNo description
SMARTSM010192.0E-816114IPR003340B3 DNA binding domain
SuperFamilySSF1019362.88E-1816112IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-1418112IPR003340B3 DNA binding domain
PROSITE profilePS5086310.36253116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MHMQFSESEP VMKELCSKIL TPTDVRVRLS FPTATTREHF KLLEGSQSLD FQVRDKYSKV  60
WTFRLCTGKN GHLKPVLTKG WRDFVKRMGL KVGDKVIFVV HGNHNDQLGI QVKRNIMLLG  120
NEHWANL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481135.12e-72PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A2P5Y9662e-87A0A2P5Y966_GOSBA; Uncharacterized protein
STRINGGorai.005G241200.13e-71(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17815410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-10B3 family protein