PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00736_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 595aa    MW: 65437.8 Da    PI: 6.8318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00736_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.6e-10451498455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Cotton_A_00736_BGI-A2_v1.0 451 SHSLAERVRREKISERLKYLQNLVPGC----NKITGKAGMLDEIINYVQSLQ 498
                                 8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1610774.84E-14128335IPR000932Photosystem antenna protein-like
PfamPF004218.3E-9931327IPR000932Photosystem antenna protein-like
Gene3DG3DSA:1.10.10.6701.1E-8304327No hitNo description
CDDcd000833.13E-10445502No hitNo description
SuperFamilySSF474591.1E-16445516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.421447497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-17447515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7451498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-9453503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009767Biological Processphotosynthetic electron transport chain
GO:0009521Cellular Componentphotosystem
GO:0016168Molecular Functionchlorophyll binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MKTLYSLRRF YPVETLFNGT LALAGRDQET TGFAWWAGNA RLINLSGKLL GAHVAHAGLI  60
VFWAGAMNLF EVAHFVPEKP MYEQGLILLP HLATLGWGVG PGGEVIDTFP YFVSGVLHLI  120
SSAVLGFGGI YHALLGPETL EESFPFFGYV WKDRNKMTTI LGIHLILLGI GAFLLVFKAL  180
YFGGVYDTWA PGGGDVRKIT NLTLSPSVIF GYLLKSPFGG EGWIVSVDDL EDIIGGHVWL  240
GSICIFGGIW HILTKPFAWA RRALVWSGEA YLSYSLGALS VFGFIACCFV WFNNTAYPSE  300
FYGPTGPEAS QAQAFTFLVR DQRLGANPCE YGNEPSFNID YAISRTSSRQ PPVPAAVAAS  360
EAAENMGSSV VRESYKKRKA DKLQNSKAVV VDGSTKKIKA CEEEEEKESK ITGPPSTTIK  420
SNSYKANSKV SEVQKPDYIH VRARRGQATD SHSLAERVRR EKISERLKYL QNLVPGCNKI  480
TGKAGMLDEI INYVQSLQHQ VEFLSMKIAA VNPRLDFNTD NSFANEDVFP RVGNGISSDM  540
AKPFCYLHFN PETVARGTVC VSDTPFLDLS CLDQIQPPSA ATWDVELQNL YNVGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jcu_c0.013271327Photosystem II CP43 reaction center protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtOne of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. {ECO:0000255|HAMAP-Rule:MF_01496}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9071000.0GU907100.1 Gossypium thurberi chloroplast, complete genome.
GenBankHQ3257400.0HQ325740.1 Gossypium arboreum chloroplast, complete genome.
GenBankHQ3257420.0HQ325742.1 Gossypium herbaceum var. africanum chloroplast, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqYP_004021313.10.0photosystem II CP43 chlorophyll apoprotein (chloroplast)
RefseqYP_005087689.10.0photosystem II 44 kDa protein (chloroplast)
RefseqYP_006503522.10.0photosystem II 44 kDa protein (chloroplast)
RefseqYP_008992805.10.0photosystem II CP43 chlorophyll apoprotein (chloroplast)
RefseqYP_009132935.10.0photosystem II 44 kDa protein (chloroplast)
RefseqYP_009253731.10.0photosystem II 44 kDa protein (chloroplast)
RefseqYP_009259883.10.0photosystem II CP43 chlorophyll apoprotein (chloroplast)
RefseqYP_009308295.10.0photosystem II 44 kDa protein (chloroplast)
RefseqYP_009316889.10.0photosystem II 44 kDa protein (chloroplast)
RefseqYP_009337930.10.0PSII 43 kDa protein (chloroplast)
RefseqYP_009340987.10.0photosystem II 44 kDa protein (chloroplast)
RefseqYP_009341071.10.0photosystem II 44 kDa protein (chloroplast)
RefseqYP_009341155.10.0PSII 43 kDa protein (chloroplast)
RefseqYP_009341239.10.0PSII 43 kDa protein (chloroplast)
RefseqYP_009341323.10.0PSII 43 kDa protein (chloroplast)
RefseqYP_009341407.10.0PSII 43 kDa protein (chloroplast)
RefseqYP_009341491.10.0PSII 43 kDa protein (chloroplast)
RefseqYP_009341575.10.0PSII 43 kDa protein (chloroplast)
RefseqYP_009364490.10.0photosystem II 44 kDa protein (chloroplast)
RefseqYP_009380381.10.0photosystem II CP43 chlorophyll apoprotein (chloroplast)
SwissprotQ2L9010.0PSBC_GOSHI; Photosystem II CP43 reaction center protein
TrEMBLA0A142BYR90.0A0A142BYR9_9MYRT; Photosystem II CP43 reaction center protein
TrEMBLA0A142K3390.0A0A142K339_9MYRT; Photosystem II CP43 reaction center protein
TrEMBLA0A159BNT50.0A0A159BNT5_9ROSI; Photosystem II CP43 reaction center protein
TrEMBLA0A1L1WPQ60.0A0A1L1WPQ6_GOSAI; Photosystem II CP43 reaction center protein
TrEMBLA0A1L1WQG20.0A0A1L1WQG2_9ROSI; Photosystem II CP43 reaction center protein
TrEMBLA0A1L1WSE20.0A0A1L1WSE2_9ROSI; Photosystem II CP43 reaction center protein
TrEMBLA0A1L1WUN40.0A0A1L1WUN4_GOSDV; Photosystem II CP43 reaction center protein
TrEMBLA0A1N7T6N00.0A0A1N7T6N0_9ROSI; Photosystem II CP43 reaction center protein
TrEMBLA0A1S6KIY80.0A0A1S6KIY8_IDEPO; Photosystem II CP43 reaction center protein (Fragment)
TrEMBLA0A1W5T2200.0A0A1W5T220_9MYRT; Photosystem II CP43 reaction center protein
TrEMBLA0A2S0X0L10.0A0A2S0X0L1_9ROSI; Photosystem II CP43 reaction center protein
TrEMBLA0A346KKJ50.0A0A346KKJ5_9ROSI; Photosystem II CP43 reaction center protein
TrEMBLA0A346KKS80.0A0A346KKS8_GOSSC; Photosystem II CP43 reaction center protein
TrEMBLA0A4D6I8580.0A0A4D6I858_9ROSI; Photosystem II CP43 chlorophyll apoprotein
TrEMBLH2B8D20.0H2B8D2_GOSDA; Photosystem II CP43 reaction center protein
TrEMBLH2B9310.0H2B931_GOSRA; Photosystem II CP43 reaction center protein
TrEMBLH9LI280.0H9LI28_GOSGO; Photosystem II CP43 reaction center protein
TrEMBLI6LQB70.0I6LQB7_9ROSI; Photosystem II CP43 reaction center protein
TrEMBLI6M0670.0I6M067_9ROSI; Photosystem II CP43 reaction center protein
TrEMBLI6M0F00.0I6M0F0_9ROSI; Photosystem II CP43 reaction center protein
STRINGTRIUR3_00075-P10.0(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-55cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Lee SB, et al.
    The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms.
    BMC Genomics, 2006. 7: p. 61
    [PMID:16553962]