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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_00715_BGI-A2_v1.0 | ||||||||
Common Name | F383_06836 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 661aa MW: 72892 Da PI: 6.6936 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.4e-09 | 401 | 438 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV++WF N R + Cotton_A_00715_BGI-A2_v1.0 401 FEHflHPYPKDSEKIMLARQTGLTRSQVSNWFINARVR 438 664459******************************88 PP | |||||||
2 | BELL | 127.7 | 4e-41 | 263 | 334 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+a+ag+g+akpYt++Al++iSrhFrcLkd i +qi Cotton_A_00715_BGI-A2_v1.0 263 ERQELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDAIAGCGAAKPYTAVALQTISRHFRCLKDTINGQI 334 79********************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.5E-62 | 192 | 332 | IPR006563 | POX domain |
Pfam | PF07526 | 9.5E-51 | 198 | 330 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.325 | 379 | 442 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-10 | 382 | 446 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.73E-13 | 382 | 443 | No hit | No description |
SuperFamily | SSF46689 | 1.2E-17 | 383 | 449 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-29 | 385 | 448 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.6E-18 | 399 | 438 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MATYYTGSDN QKDTIPMIYM RESLPGSYAE SPVLQGNTMM YMNSGSYSDA FAGNSQQQNS 60 CIGMQGVEAS DSTSQQHGIM SNLGGSHVVE HDFGAWRDAS SILHNGQNLQ GPQGLSLRLG 120 TQIPFGIQMA SIPFRNPDSD LASFLSHNPS LTGGRNSSSR DEQPRNAGYL PHGFSGANQG 180 TNKGDLYACG MSSMSRAIPN SKYLKAAQQL LDEVVNVPKA LKQAEGEKNP MKSCKEDDEG 240 SKNVPSNQQE SSNNIQKELS HAERQELQSK LTKLLSMLDE VDRRYKQYYH QMQIVVSSFD 300 AIAGCGAAKP YTAVALQTIS RHFRCLKDTI NGQIQATRKS LGEQDTLEDG KGVRITRLRY 360 VEQQLRQQKA LQQLGMMPQH AWRPQRGLPE SSVSILRAWL FEHFLHPYPK DSEKIMLARQ 420 TGLTRSQVSN WFINARVRLW KPMVEEMYKE EFADLEMDSH SSSENAVKAR KGDTRTSEDI 480 GGDQQQSGSS SATERCSTGQ LVDSKSNHVP DVDIAGTITG TVLQNVSHRE AETEHGLLRL 540 SKVQRPNVDN ANLFLDGITH SDGVGDRFMK ATTTSYHVSE LGRFGNASGV SLTLGLQHCE 600 DGSIPMSGVG HQNFVAMTRD NDIYNPAASS IGPETTDSEY VTPGNRQHRF NSSHLLHDFV 660 A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 9e-17 | 388 | 445 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 9e-17 | 388 | 445 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017633879.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 7 | ||||
Refseq | XP_017633880.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A0B0NMB8 | 0.0 | A0A0B0NMB8_GOSAR; BEL1-like homeodomain protein 6 | ||||
STRING | Gorai.005G246400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2869 | 25 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-146 | BEL1-like homeodomain 6 |