PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_00658_BGI-A2_v1.0

Common Name

F383_08818

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 344aa MW: 38098.5 Da PI: 6.5283

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00658_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.5e-09	60	107	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N+ f eL l ++ +K++Ka+iL+ +++ +k+L Cotton_A_00658_BGI-A2_v1.0 60 LQKADREKSRRDRLNEHFLELGNALDPD----RPKNDKATILTDTIQLLKDL 107 56778******************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.16	57	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.26E-12	57	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.3E-12	58	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.33E-8	58	111	No hit	No description
Pfam	PF00010	2.5E-7	60	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-7	63	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDQLRKDAAF LQSIPSSNPS IIEFRQPPVD PLVPSTTRTQ SKSGQRDGEE PKDCITARKL 60 QKADREKSRR DRLNEHFLEL GNALDPDRPK NDKATILTDT IQLLKDLTSQ VTKLKGEHAM 120 LTEESREVIV EKNDLKDEKA SLKSEIDDLN IQYQQRVRTM FPWASVDYPV VMAPPSYPFP 180 VPMAMPPPGA IPMHPSMQPF PFFGNQNPGV IHNPCSTFVP YMTPNTMVEQ QPTQHVTPPA 240 QPSSRSHASG KEDSKNKSSG ESKIEKTVDS NDVATDLELK TPGSTADQDL SSGQRKLKKS 300 LRKENSNTEG SYSSRCSSSY SAQDSSSNSV VGGKKADDLD GRND

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDQLRKDAAF LQSIPSSNPS IIEFRQPPVD PLVPSTTRTQ SKSGQRDGEE PKDCITARKL  60
QKADREKSRR DRLNEHFLEL GNALDPDRPK NDKATILTDT IQLLKDLTSQ VTKLKGEHAM  120
LTEESREVIV EKNDLKDEKA SLKSEIDDLN IQYQQRVRTM FPWASVDYPV VMAPPSYPFP  180
VPMAMPPPGA IPMHPSMQPF PFFGNQNPGV IHNPCSTFVP YMTPNTMVEQ QPTQHVTPPA  240
QPSSRSHASG KEDSKNKSSG ESKIEKTVDS NDVATDLELK TPGSTADQDL SSGQRKLKKS  300
LRKENSNTEG SYSSRCSSSY SAQDSSSNSV VGGKKADDLD GRND

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017631906.1	0.0	PREDICTED: transcription factor bHLH121
Swissprot	Q9LT23	3e-90	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A1U8LJE7	0.0	A0A1U8LJE7_GOSHI; transcription factor bHLH121-like isoform X2
STRING	Gorai.005G252200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-82	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]