PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00586_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 778aa    MW: 86241.9 Da    PI: 7.0879
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00586_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK89.23.4e-28490540252
                      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                 ek+i l+dl+++F++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  Cotton_A_00586_BGI-A2_v1.0 490 EKTIGLQDLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 540
                                 799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF557813.26E-6289386IPR029016GAF domain-like
Gene3DG3DSA:3.30.450.404.9E-5289386IPR029016GAF domain-like
PROSITE profilePS5151917.393479560IPR003035RWP-RK domain
PfamPF020423.0E-25493540IPR003035RWP-RK domain
SuperFamilySSF542772.52E-21674765No hitNo description
Gene3DG3DSA:3.10.20.2405.6E-21677761No hitNo description
PROSITE profilePS5174523.455680763IPR000270PB1 domain
SMARTSM006662.0E-23680763IPR000270PB1 domain
PfamPF005646.1E-15681762IPR000270PB1 domain
CDDcd064071.19E-38681762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MEGDVGFYDD AAVDMDFIDE LLFEGFNINS DRGQAGLDLS RSENRAVTSM SRLMEAVLYL  60
KESTKGRDDV LIQIWVPVKK GGKHVLTTQG QPYSLNTNCK SLEIFRDVSE AYSFPAEEDS  120
EGPIGLPGRV FLGKLPEWTP DVRFFRRDEY RRVGLAQKYN VGGSFALPVF EQGSGTCLGV  180
VEIVSCTQKI NYRPELEHVC KALEAVDLRS SHCFTPPNVK GYNELYRVAL PEITEVLRSI  240
CKRYELPLAL TWAPSRHSDK NFYCCVSTSG SSCFVADEGL TGFLEACSEH QLFRGQGIVG  300
RAFTTNKPCF ATDITAFSKT IYPLSHHARM FGLRAAVAIP LQSAFTGSVV FVLELFLPKD  360
CHDSKAQKRM LNLLSGFMQQ ACHSLQVIVD KELEEEVILP VKEMSKSNKK ETEFRIFSTK  420
EDSPVESSSW IAHMMEAQQK GKGVSSSWEY KKELDFRQVD HQHAQTNTVD SGHRDLAEKK  480
AGEKKRKKTE KTIGLQDLRQ HFAGSLKDAA KSIGVCPTTL KRICRQHGIT RWPSRKIKKV  540
GHSLRKLQVV IESVQGAEGA IQIGSFYSSF PELSSPICSN NGPSSTLKLS NHSMSSEPGL  600
ETAMFSQGAT ASKSPLSSSS QSSGSSTCCS SGAKQQSTSI NALGGMEDPG GPLKSVIGDA  660
KLHASNQHEM KLLQHQTGGD LRVKAMFGQV KLLFGLQPNW GFIDLQREIA KHFNIEDVDR  720
INLKYLDDDN EWVLLTCDAD LEECIDIYKS SQTHTIKISL HQVSNLTLGS SFGYNDPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1483487KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633071.10.0PREDICTED: protein NLP2
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLA0A2P5YLB80.0A0A2P5YLB8_GOSBA; Uncharacterized protein
STRINGGorai.005G259100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein