PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_00551_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26195.8 Da PI: 8.8233 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.3 | 3.5e-22 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfskRr g++KKA+EL++LC++e+ +i+fs+ +k++ + Cotton_A_00551_BGI-A2_v1.0 17 KNNSNLQVTFSKRRSGLFKKASELCTLCGVEIGIIVFSPGNKVFSF 62 89****************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.0E-31 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.787 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.37E-27 | 7 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.13E-34 | 7 | 78 | No hit | No description |
PRINTS | PR00404 | 3.9E-18 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-24 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-18 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-18 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGKKSLGRQK VEMVKMKNNS NLQVTFSKRR SGLFKKASEL CTLCGVEIGI IVFSPGNKVF 60 SFGHPEIGNV IDRYVNGNPP DNSGTLHLIE AHRNANVREL NMQLTELVNQ IEIEKRRGEE 120 LNQMRRASQS QYWWESPIEE QNPQQLQQLK SALEELKKNV AKQVEKLLIQ TTNSQPFFVG 180 SSSAGMFPNN VEFDPNTMSQ GYNNVPNMIP PGFNPNPELY NPCPPGFGHA FF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 5e-17 | 7 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2A |
3kov_B | 5e-17 | 7 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2A |
3kov_I | 5e-17 | 7 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2A |
3kov_J | 5e-17 | 7 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2A |
3p57_A | 5e-17 | 7 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2A |
3p57_B | 5e-17 | 7 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2A |
3p57_C | 5e-17 | 7 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2A |
3p57_D | 5e-17 | 7 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2A |
3p57_I | 5e-17 | 7 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2A |
3p57_J | 5e-17 | 7 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2A |
5f28_A | 6e-17 | 6 | 85 | 1 | 80 | MEF2C |
5f28_B | 6e-17 | 6 | 85 | 1 | 80 | MEF2C |
5f28_C | 6e-17 | 6 | 85 | 1 | 80 | MEF2C |
5f28_D | 6e-17 | 6 | 85 | 1 | 80 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481265.1 | 1e-171 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_017632483.1 | 1e-171 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 9e-62 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0D2SNQ8 | 1e-170 | A0A0D2SNQ8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G263100.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-64 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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