PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 206aa MW: 22662.2 Da PI: 4.5997

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00526_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.4	4.1e-14	44	92	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kGVr ++g+Wv+e+r+p +k+ r++lg+f + +Aaka++ a+++l+g Cotton_A_00526_BGI-A2_v1.0 44 IFKGVRT--RKGKWVSEVREP---NKKSRIWLGTFSCPGMAAKAYDVAALALRG 92 59*74..46**9998...347***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.4E-9	43	92	IPR001471	AP2/ERF domain
CDD	cd00018	1.62E-25	43	102	No hit	No description
PROSITE profile	PS51032	18.281	44	100	IPR001471	AP2/ERF domain
SMART	SM00380	2.2E-26	44	106	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.94E-16	44	102	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.1E-25	44	102	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MVQSSKSHEI SSSSSQSEAG STSLGQSQKR RAGRKKFKET RHPIFKGVRT RKGKWVSEVR 60 EPNKKSRIWL GTFSCPGMAA KAYDVAALAL RGDAASLNFP ESARTLPRPK SLSVKDIQIA 120 AMEAAETFID DKTSPDSVSS AVPAFPENMV FEDEDEVFNM PGILESMAEG LMITPPSMQK 180 GYYPDDDDDD DDDDGNDYVE VNLWGD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622119.1	1e-151	PREDICTED: dehydration-responsive element-binding protein 1F-like
Swissprot	A2WZI4	1e-48	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	1e-48	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	A0A1U8J7V0	1e-120	A0A1U8J7V0_GOSHI; dehydration-responsive element-binding protein 1F-like
STRING	Gorai.002G241700.1	1e-119	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM355	28	187

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25490.1	1e-40	C-repeat/DRE binding factor 1

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]