PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_00508_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 455aa MW: 51884.7 Da PI: 5.6187

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00508_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.3	4.8e-24	109	216	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkryk 62 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk Cotton_A_00508_BGI-A2_v1.0 109 KWTDNMVRLLIMAVYYIGDDQASSEggnnndpsgkkkgvggsggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYK 191 7************98888887666678889999999***************************************** PP trihelix 63 kikegekkr.tsessstcpyfdqle 86 +++++ +k+ ++e++++ +++++++ Cotton_A_00508_BGI-A2_v1.0 192 RVNDILGKGtACEVVENQRLLESMD 216 *****55********9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.0E-22	107	241	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
METNNGLSGG MFLGIGSGML GLEMPLHPQP QQQPQNPQSV QNPHSLHHQQ QHPQVVAYAH 60 HETQHVKQGY HPFGSKPKQI STISDEDEPG FTLDDGSSKR KASPWQRMKW TDNMVRLLIM 120 AVYYIGDDQA SSEGGNNNDP SGKKKGVGGS GGLLQKKGKW KSVSRAMMEK GFYVSPQQCE 180 DKFNDLNKRY KRVNDILGKG TACEVVENQR LLESMDLSPK MKDEVKKLLN SKHLFFREMC 240 AYHNSCGHVT QEVANETPPQ MQQRCLHSSD NAQIGGNRVG GSTKTLKLEE SDDEDDEDDD 300 ESDDDDDDDD DDETMDGHDE DQNVENSSRK RPRKGGVSPL MQQLSNEITK VIQDGSKNSW 360 EKKHWMKMKL IQLEEQQVSY QCEAFELEKQ RLKWVKFSGK KEREMEKSKL ENERKWLENE 420 RMVLIVRQQE LELVDMSDVQ QHSSNKRGDL SSFTS

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

METNNGLSGG MFLGIGSGML GLEMPLHPQP QQQPQNPQSV QNPHSLHHQQ QHPQVVAYAH  60
HETQHVKQGY HPFGSKPKQI STISDEDEPG FTLDDGSSKR KASPWQRMKW TDNMVRLLIM  120
AVYYIGDDQA SSEGGNNNDP SGKKKGVGGS GGLLQKKGKW KSVSRAMMEK GFYVSPQQCE  180
DKFNDLNKRY KRVNDILGKG TACEVVENQR LLESMDLSPK MKDEVKKLLN SKHLFFREMC  240
AYHNSCGHVT QEVANETPPQ MQQRCLHSSD NAQIGGNRVG GSTKTLKLEE SDDEDDEDDD  300
ESDDDDDDDD DDETMDGHDE DQNVENSSRK RPRKGGVSPL MQQLSNEITK VIQDGSKNSW  360
EKKHWMKMKL IQLEEQQVSY QCEAFELEKQ RLKWVKFSGK KEREMEKSKL ENERKWLENE  420
RMVLIVRQQE LELVDMSDVQ QHSSNKRGDL SSFTS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX623081	0.0	JX623081.1 Gossypium hirsutum clone NBRI_GE70112 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622339.1	0.0	PREDICTED: 46 kDa FK506-binding nuclear protein-like isoform X1
TrEMBL	A0A1U8N2G6	0.0	A0A1U8N2G6_GOSHI; MATH and LRR domain-containing protein PFE0570w-like isoform X1
STRING	Gorai.002G243900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6762	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-103	sequence-specific DNA binding transcription factors