 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cotton_A_00435_BGI-A2_v1.0 |
| Common Name | F383_14735 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
NF-YB |
| Protein Properties |
Length: 163aa MW: 17600.6 Da PI: 8.1933 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_00435_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 180.1 | 1.9e-56 | 28 | 122 | 1 | 95 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83
vreq+rflPian+srimkk+lPanaki+kdaketvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy++pl
Cotton_A_00435_BGI-A2_v1.0 28 VREQERFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPL 110
69********************************************************************************* PP
NF-YB 84 kvylkkyreleg 95
k+yl+kyre ++
Cotton_A_00435_BGI-A2_v1.0 111 KIYLTKYREGDT 122
********9665 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 163 aa
Download sequence Send
to blast |
ATSAPVPASP GGGGSHESGG EQSPRSNVRE QERFLPIANI SRIMKKALPA NAKIAKDAKE 60
TVQECVSEFI SFITSEASDK CQKEKRKTIN GDDLLWAMAT LGFEDYIDPL KIYLTKYREG 120
DTKGSVKGGD TFAKKDVQPG PNAQLAHQGS FSQGVYYGNS QSQ
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY185541 | 1e-65 | AY185541.1 Gossypium barbadense clone 1__10 putative CCAAT-binding transcription factor gene, partial cds. |
| GenBank | AY185542 | 1e-65 | AY185542.1 Gossypium barbadense clone 2__10 putative CCAAT-binding transcription factor gene, partial cds. |
