PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00432_BGI-A2_v1.0
Common NameF383_00249
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 468aa    MW: 51484.9 Da    PI: 6.3587
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00432_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.75.2e-071521842655
                         AP2  26 g...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 g   + k+++lg f+ta  Aa+a+++a+ k++g
  Cotton_A_00432_BGI-A2_v1.0 152 GvtdCGKQVYLGGFDTAHAAARAYDRAAIKFRG 184
                                 433234************************998 PP
2AP241.92.5e-13227277155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ k +g
  Cotton_A_00432_BGI-A2_v1.0 227 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAAIKCNG 277
                                 89********.7******...5...334336**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.181132192IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-10149194IPR016177DNA-binding domain
SMARTSM003807.9E-17149198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-12156193IPR001471AP2/ERF domain
CDDcd000186.16E-26227287No hitNo description
PfamPF008475.5E-9227277IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-16227286IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-16228285IPR001471AP2/ERF domain
SMARTSM003803.7E-32228291IPR001471AP2/ERF domain
PROSITE profilePS5103215.527228285IPR001471AP2/ERF domain
PRINTSPR003674.9E-6229240IPR001471AP2/ERF domain
PRINTSPR003674.9E-6267287IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MVLDLNLTVI SDVDDNSMAG GFSGYNNNQM DSSGGSFGSS VVNADTATTA GDDDSSSNAA  60
ATDTFGYSFD ILKASREEEL DKYNNRTTIP LFPVDVEGNG WKSTGWLDLA GSGEVAAEQR  120
IVPHQHQQQV QLRQQVKKSR RGPRSRSSQY RGVTDCGKQV YLGGFDTAHA AARAYDRAAI  180
KFRGTDADIN FNVSDYDDDI KQMSNFTKEE FVHILRRQST GFSRGSSKYR GVTLHKCGRW  240
EARMGQLLGK KYIYLGLFDS EIEAARAYDK AAIKCNGREA VTNFEPSTYE GELISESENG  300
DQNRVLDLNL GIAPPCTSNL QKENENSSNF PFQHSYDGLP VASGARFENS ASATMRVQPS  360
LGQATAFKHV PNWNVANPSF FPVYRERAIE KRIEVDSTPW QIQGPYGGTK EMSLFPSAAS  420
SGFSSSIITS PSAAAGQLRV PNATFLQHHF PPVIMNPSTP HFYCRTER
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth. Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q8H443}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6210205e-49JX621020.1 Gossypium hirsutum clone NBRI_GE67425 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017620683.10.0PREDICTED: floral homeotic protein APETALA 2-like
SwissprotB8B8J22e-93AP23_ORYSI; APETALA2-like protein 3
TrEMBLA0A0B0PLU10.0A0A0B0PLU1_GOSAR; Floral homeotic APETALA 2-like protein
STRINGGorai.002G251500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2206145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-83related to AP2.7