PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_00303_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 340aa MW: 38503.9 Da PI: 9.2278

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00303_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.4e-32	57	110	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+++AtPk +lelm++kgL+++hvkSHLQ+YR+ Cotton_A_00303_BGI-A2_v1.0 57 PRLRWTPDLHLRFVHAVERLGGQDRATPKLVLELMNIKGLSIAHVKSHLQMYRS 110 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.006	53	113	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-30	53	111	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-15	56	111	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-23	57	112	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	58	109	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MEENSGTGCS KTVKAETESE ENEGESRPKN GGSSSNSTVE ENEKKLSVRP YVRSKLPRLR 60 WTPDLHLRFV HAVERLGGQD RATPKLVLEL MNIKGLSIAH VKSHLQMYRS KKIDDSGQVI 120 SNHRHLVESG DRNIYNLSQL PMLQGYSNLL HHHHHQGDSS SSFYRYGDAS LGNREYSMRR 180 PYTSTSFINE SRPGLHRTVT EKIFSSNWAS YDFKCNQVQP RLGPIETSSM SQNTSLSIHN 240 SPLISQDLKS TKRKTFDCDL DLDLSLRITA KEDKQPNSEQ GDVVSELSLS LYSPSSSSSK 300 LSRLKSEEDH CTKKNARRVH RLLSVWSCNL VYSSLSREGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	58	112	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	58	112	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	58	112	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	58	112	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394941	1e-125	GQ394941.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1964 SSR marker DPL0302 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622639.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600
Refseq	XP_017622640.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A1U8PDK6	0.0	A0A1U8PDK6_GOSHI; putative Myb family transcription factor At1g14600
STRING	Gorai.002G265400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	8e-64	G2-like family protein