PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_00212_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 124aa MW: 14193.5 Da PI: 8.8672 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.5 | 4.1e-12 | 35 | 94 | 30 | 87 |
..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 30 keesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++ + l ++d +g W++++ + ++++ + v+ +GW +Fv+ ++L++gD+vv++++++ Cotton_A_00212_BGI-A2_v1.0 35 CHGRIVLNVKDDEGTFWNFRCLIrtERYGPKLVIVSGWIDFVRTKDLRQGDIVVLYREED 94 34567899*************7755666666*************************6643 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0041 | 3 | 109 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-14 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.54E-14 | 3 | 107 | No hit | No description |
SuperFamily | SSF101936 | 6.54E-12 | 4 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.5E-9 | 31 | 94 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.263 | 41 | 109 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 124 aa Download sequence Send to blast |
MEIFATVLTI TDIERRLSVS NGCLLLQALS HFNGCHGRIV LNVKDDEGTF WNFRCLIRTE 60 RYGPKLVIVS GWIDFVRTKD LRQGDIVVLY REEDVIAGME YKIEVKKKNS FSSLNRIKGS 120 LGLN |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286336.1 | 1e-33 | auxin response factor 3-like | ||||
TrEMBL | A0A2P5W7I0 | 3e-84 | A0A2P5W7I0_GOSBA; Uncharacterized protein | ||||
STRING | EOX98117 | 9e-37 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM35420 | 2 | 2 |