PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_00211_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 133aa MW: 15939.7 Da PI: 9.5221

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00211_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.7	1.3e-10	21	94	12	83
HTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS B3 12 ksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 ++ rl++p + + + ++ ++l+++d+s +W++++i ++g v++kGW eFv a+gLk+ D +v + Cotton_A_00211_BGI-A2_v1.0 21 ER-RLSVPTRILYLFpytT-TDHRCFDLQVKDTSDVVWSFRCIR--RDGVyakPVFSKGWLEFVYAKGLKAYDKIVVY 94 33.4788887774446642.334679**************54..33333459*****************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.7E-13	8	97	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-11	9	95	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.62E-12	10	98	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MKHRLHMELI FSKLLTQTDI ERRLSVPTRI LYLFPYTTTD HRCFDLQVKD TSDVVWSFRC 60 IRRDGVYAKP VFSKGWLEFV YAKGLKAYDK IVVYKEKGVV EGDVPYRIEV KRKILRLMGE 120 DIWIEIEHLH LYS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468593.1	2e-86	PREDICTED: uncharacterized protein LOC105786621
TrEMBL	A0A0D2QYA7	7e-89	A0A0D2QYA7_GOSRA; Uncharacterized protein
STRING	Gorai.002G006400.1	1e-89	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22060	3	4