 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cotton_A_00210_BGI-A2_v1.0 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
Family |
B3 |
Protein Properties |
Length: 347aa MW: 39901.3 Da PI: 9.0644 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_00210_BGI-A2_v1.0 | genome | BGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 51.1 | 2.5e-16 | 5 | 95 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
ff +l+ s++l+ + l++p +f+++++ + s+ l+ ++g +W+v + rk+++++++++GW eF + ++ g f++F+++
Cotton_A_00210_BGI-A2_v1.0 5 FFHKLILSSTLQDKKLRIPDNFVKKFKDE--LSVAAALTVPDGHVWRVGI--RKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYE 85
8899999****************999755..99*****************..********************************* PP
SSSEE..EEEEE CS
B3 86 grsefelvvkvf 97
g+s f v++f
Cotton_A_00210_BGI-A2_v1.0 86 GNSAF--SVSIF 95
*9999..88887 PP
|
2 | B3 | 63.1 | 4.5e-20 | 242 | 331 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
vl ps+ + ++++lp fae+ +g++ ++l+ ++g++W+v++iyr+++ + +++GW eF +n+L egD++vF+l +
Cotton_A_00210_BGI-A2_v1.0 242 VLRPSYLYRGCIMYLPSCFAEHLSGVSG---FIKLQLPDGKQWSVRCIYRGGKAK--FSQGWYEFTVENNLGEGDVCVFELLR 319
78899***************88888854...4***************99888866..89**********************99 PP
SSEE..EEEEE- CS
B3 87 rsefelvvkvfr 98
++ef l+v+vfr
Cotton_A_00210_BGI-A2_v1.0 320 SREFVLKVTVFR 331
9*********98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MPRPFFHKLI LSSTLQDKKL RIPDNFVKKF KDELSVAAAL TVPDGHVWRV GIRKGDNKVW 60 FQEGWPEFLD RYYIRIGYFL IFRYEGNSAF SVSIFNLYNS EINYQSNALL GSQYNHGKSY 120 PFDELEDDEC MSSAMQHLFG GSKLNRCVNW SGEVNLNAAK SANNQPIRGS ETPPPKKPGR 180 KKQKFDPNDQ DLSVGHEDDS EMRYRFYESA SARKRTVTAE ERERAMNAAK AFEPSNPFCR 240 VVLRPSYLYR GCIMYLPSCF AEHLSGVSGF IKLQLPDGKQ WSVRCIYRGG KAKFSQGWYE 300 FTVENNLGEG DVCVFELLRS REFVLKVTVF RVMDGAGLMH RSQYNAN
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 9e-72 | 205 | 332 | 15 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-72 | 205 | 332 | 15 | 142 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |